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[187267_at]

Description C56G2.1 /REP_DB=WormBase Gene ID /WP=CE24866 /TR=SW:Q09285 /GB=AAA64328.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 130.7
(3)
P 		47.2
(-1.7)
A 		25.2
(-3)
A 		77.3
(-0)
A 		106
B 109.4
(3)
P 		46.6
(-3)
A 		59
(-1.8)
A 		109.3
(3)
A 		63
C 139.8
(3)
P 		112.9
(1.7)
A 		64.3
(-0.6)
A 		15.5
(-3)
A 		124
avr 126.6
(3) 		68.9
(-1.5) 		49.5
(-3) 		67.4
(-1.6) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 70.7
(1)
A 		102.4
(3)
A 		24.2
(-1.8)
A 		15.8
(-2.4)
A 		18.4
(-2.2)
A 		5.4
(-3)
A 		97
B 63.5
(3)
A 		28.5
(-0.7)
A 		45.5
(1.1)
A 		6.8
(-3)
A 		16.3
(-2)
A 		7.5
(-2.9)
A 		57
C 221
(3)
P 		41.8
(-1.9)
A 		22.2
(-2.5)
A 		17.1
(-2.6)
A 		13.4
(-2.7)
A 		3.3
(-3)
A 		218
avr 118.4
(3) 		57.6
(-0.2) 		30.6
(-1.7) 		13.2
(-2.6) 		16
(-2.4) 		5.4
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 47.6
(3)
P 		10.2
(-2.5)
A 		6.6
(-3)
A 		11.3
(-2.3)
A 		41
B 34.9
(3)
P 		11.5
(-3)
A 		13.7
(-2.4)
A 		23.3
(0)
A 		23
C 46.3
(3)
P 		32.5
(1.1)
A 		22.4
(-0.3)
A 		2.6
(-3)
A 		44
avr 42.9
(3) 		18.1
(-1.9) 		14.2
(-2.6) 		12.4
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 13
(-1)
A 		36.4
(3)
A 		5.3
(-2.3)
A 		4
(-2.5)
A 		5.5
(-2.3)
A 		1.3
(-3)
A 		35
B 22.1
(3)
A 		9.5
(-0.7)
A 		11
(-0.3)
A 		1.8
(-3)
A 		6.6
(-1.6)
A 		2.8
(-2.7)
A 		20
C 81.9
(3)
P 		12.8
(-2.1)
A 		5.7
(-2.7)
A 		3.4
(-2.8)
A 		4.3
(-2.8)
A 		1.1
(-3)
A 		81
avr 39
(3) 		19.6
(-0.1) 		7.3
(-2.1) 		3.1
(-2.8) 		5.5
(-2.4) 		1.7
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7061
Sequence Type Exemplar sequence
Representative Public ID C56G2.1 NCBI
Target Description C56G2.1 /REP_DB=WormBase Gene ID /WP=CE24866 /TR=SW:Q09285 /GB=AAA64328.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171163(11), NM_171164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171163 NCBI Caenorhabditis elegans C56G2.1a (C56G2.1) mRNA, complete cds. 11/11 None
NM_171164 NCBI Caenorhabditis elegans C56G2.1b (C56G2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000001594 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6354339:6365606:1 11/11 None
SNAP00000001589 ENSEMBL cdna:SNAP chromosome:CEL140:III:6363060:6365356:1 11/11 None
C56G2.1a ENSEMBL cdna:known chromosome:CEL140:III:6353324:6366597:1 gene:C56G2.1 11/11 None
C56G2.1b ENSEMBL cdna:known chromosome:CEL140:III:6362919:6366597:1 gene:C56G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6353420-6365355(+) 100.0 100.0
Public Domain and Genome References
Ensembl C56G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM22053 Hypothetical protein C56G2.1a [Caenorhabditis elegans] ref|NP_741190.1| C56G2.1a [Caenorhabditis elegans] sp|Q09285|YQK1_CAEEL Hypothetical protein C56G2.1 in chromosome III 0.0
blast T15871 hypothetical protein C56G2.2 - Caenorhabditis elegans 0.0
blast AAM22054 Hypothetical protein C56G2.1b [Caenorhabditis elegans] ref|NP_741191.1| C56G2.1b [Caenorhabditis elegans] 0.0
blast T15872 hypothetical protein C56G2.1 - Caenorhabditis elegans 0.0
blast CAE64415 Hypothetical protein CBG09108 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008191 EMBL-EBI Maternal tudor protein 6.4E-31
Pfam IPR004087 EMBL-EBI KH 2.1E-11
Pfam IPR008191 EMBL-EBI Maternal tudor protein 6.4E-31
Pfam IPR004087 EMBL-EBI KH 2.1E-11
Pfam IPR008191 EMBL-EBI Maternal tudor protein 6.4E-31
Pfam IPR004087 EMBL-EBI KH 2.1E-11
Pfam IPR008191 EMBL-EBI Maternal tudor protein 6.4E-31
Pfam IPR004087 EMBL-EBI KH 2.1E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741190.1 1 108-127
C56G2.1a 1 108-127
GENEFINDER00000001594 1 9-28
Sequence
Target Sequence 
>C. ELEGANS:187267_AT
ttctttgcgccatcttgacatgtacatgggatccttgtatggagaacaatcaaatcttcc
agaactgccgattccatgccaaaatggacttctatgtgctgctccagtcggaaatgcttg
gttccgtgcggtgactgttcagtactttgatgagacggacgaagtatttgtgaagtttgt
tgactacggaggatactcgaaaatggcccgacaagacttgagacaaattcgcacggattt
gatgtctcttccattccaatcgacagaagttatgctcgcacatgttcggccagttgatgg
aacaacgaactggagtgatgccgctatgcagaagttcagagcaatgtgcattggaaaagt
tatcaattgtaaaatggttggacagtcgcatgatactcgtataccaatggttgagcttta
catgatgtccaaagatggtaaagacgctcaggaagttcgcttcgatcaagtgctcatgaa
ctgtggtcttgcaagaaccgccgatccatcaaagatgtcccgtatcacagttccagcggc
tctcgacacagaatctcgcatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTGCGCCATCTTGACATGTAC 118 689 2004 Antisense
AAATCTTCCAGAACTGCCGATTCCA 7 119 2055 Antisense
TTCTATGTGCTGCTCCAGTCGGAAA 172 689 2093 Antisense
TGGTTCCGTGCGGTGACTGTTCAGT 680 549 2122 Antisense
CGGATTTGATGTCTCTTCCATTCCA 144 243 2237 Antisense
AAGTTATGCTCGCACATGTTCGGCC 260 157 2270 Antisense
CGAACTGGAGTGATGCCGCTATGCA 686 251 2309 Antisense
GACAGTCGCATGATACTCGTATACC 373 369 2384 Antisense
GACGCTCAGGAAGTTCGCTTCGATC 396 381 2446 Antisense
CAAAGATGTCCCGTATCACAGTTCC 372 193 2513 Antisense
GCTCTCGACACAGAATCTCGCATGA 635 299 2542 Antisense
Sequence Source Affymetrix Proprietary Database