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[187264_at]

Description C48B4.10 /REP_DB=WormBase Gene ID /WP=CE00486 /TR=SW:P34364 /GB=CAA82375.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 30      6grp_total > 86      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 126.6
(-3)
A 		186.6
(-1.2)
P 		324
(3)
P 		222.7
(-0.1)
P 		197
B 109.3
(-3)
A 		274
(1.7)
P 		228.9
(0.4)
P 		320
(3)
P 		211
C 114.9
(-3)
P 		268
(0.6)
P 		298.1
(1.3)
P 		367.6
(3)
P 		253
avr 116.9
(-3) 		242.9
(1.1) 		283.7
(2.4) 		303.4
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 694
1 2 3 4 5 6 range
A 68.6
(-3)
M 		118.3
(-2.5)
P 		269.8
(-1.2)
P 		439
(0.4)
P 		529.4
(1.2)
P 		728.6
(3)
P 		660
B 110.2
(-3)
A 		174.8
(-2.3)
P 		229
(-1.7)
P 		344
(-0.5)
P 		471.3
(0.8)
P 		673
(3)
P 		563
C 91.6
(-3)
A 		185.4
(-2.2)
P 		276.5
(-1.3)
P 		415.7
(-0.1)
P 		475.1
(0.4)
P 		762.7
(3)
P 		671
avr 90.1
(-3) 		159.5
(-2.3) 		258.4
(-1.4) 		399.6
(-0.1) 		491.9
(0.8) 		721.4
(3) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 46.1
(-1.4)
A 		40.5
(-2.1)
P 		84.7
(3)
P 		32.6
(-3)
P 		52
B 34.9
(-3)
A 		67.7
(2.9)
P 		53
(0.3)
P 		68.2
(3)
P 		33
C 38
(-3)
P 		77.1
(0.6)
P 		103.9
(3)
P 		62
(-0.8)
P 		66
avr 39.7
(-3) 		61.8
(0.2) 		80.5
(3) 		54.3
(-0.9) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 12.6
(-3)
M 		42.1
(-1.9)
P 		58.7
(-1.3)
P 		111.3
(0.6)
P 		159.8
(2.4)
P 		177.4
(3)
P 		165
B 38.3
(-3)
A 		58.2
(-2.4)
P 		55.6
(-2.5)
P 		91.1
(-1.5)
P 		191.5
(1.3)
P 		251
(3)
P 		213
C 34
(-3)
A 		56.6
(-2.4)
P 		70.4
(-2)
P 		83.6
(-1.7)
P 		153.7
(0.2)
P 		255.3
(3)
P 		221
avr 28.3
(-3) 		52.3
(-2.3) 		61.6
(-2) 		95.3
(-1) 		168.3
(1.2) 		227.9
(3) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7723
Sequence Type Exemplar sequence
Representative Public ID C48B4.10 NCBI
Target Description C48B4.10 /REP_DB=WormBase Gene ID /WP=CE00486 /TR=SW:P34364 /GB=CAA82375.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066712(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066712 NCBI Caenorhabditis elegans C48B4.10 (C48B4.10) mRNA, complete cds. 9/11 None
SNAP00000040762 ENSEMBL cdna:SNAP chromosome:CEL140:III:9563485:9564396:-1 11/11 None
GENEFINDER00000040778 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9563485:9564396:-1 9/11 None
C48B4.10 ENSEMBL cdna:known chromosome:CEL140:III:9563485:9564396:-1 gene:C48B4.10 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9563480-9564392(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B4.10
Entrez Gene 183568 Entrez gene
SwissProt P34364 EMBL-EBI
WormBase CE33604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82375 Hypothetical protein C48B4.10 [Caenorhabditis elegans] ref|NP_499113.2| C48B4.10 [Caenorhabditis elegans] sp|P34364|YLH0_CAEEL Hypothetical protein C48B4.10 in chromosome III 1.0E-101
blast CAA82375 Hypothetical protein C48B4.10 [Caenorhabditis elegans] ref|NP_499113.2| C48B4.10 [Caenorhabditis elegans] sp|P34364|YLH0_CAEEL Hypothetical protein C48B4.10 in chromosome III 8.0E-93
blast CAE65176 Hypothetical protein CBG10048 [Caenorhabditis briggsae] 5.0E-43
blast CAE65176 Hypothetical protein CBG10048 [Caenorhabditis briggsae] 6.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499113.2 4 20-42,52-71,83-105,120-142
C48B4.10 4 20-42,52-71,83-105,120-142
SNAP00000040762 5 22-44,51-70,85-103,115-137,152-174
GENEFINDER00000040778 4 20-42,52-71,83-105,120-142
Sequence
Target Sequence 
>C. ELEGANS:187264_AT
gagcagtcctatgattctccgaagctcttcggcatcattccaatcaagttcatcgtcagt
ttccttcaacttgtgtccatcgtttctcaaatcttatggctctattctgaaaatgataag
atctacctcgtccttctctctgtcggagtaagtttccttctttttggccgttgcgtcctt
gcaaaagctgatccacaaatttgcaaggttccgataaaaaaattaaaagccgcattcgtt
gagatcgttctcaatgtgttcactgtcgtcgtgttcatcaaagagcacaagctgctcatg
cgtgctcattactactctgcattgatcttcaccgtcgttccgttcatctacgccgtctac
accttcatttcattcattgagttgttctttggcgataaggatatcactttcaatcaatgc
tctccatttgcctacgccttcatctttttgtgcatctacatcttctacctggctatgtgc
cgtgtgctcatcaaggcctccgagttccagccagacgacatgcccgacttggacaccaca
caaggactcttccactacaatcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGTCCTATGATTCTCCGAAGC 604 389 43 Antisense
TTCAACTTGTGTCCATCGTTTCTCA 681 685 107 Antisense
AGCCGCATTCGTTGAGATCGTTCTC 618 81 270 Antisense
GATCGTTCTCAATGTGTTCACTGTC 609 417 285 Antisense
TGCGTGCTCATTACTACTCTGCATT 350 583 341 Antisense
GTCTACACCTTCATTTCATTCATTG 623 469 397 Antisense
ATCACTTTCAATCAATGCTCTCCAT 74 29 445 Antisense
TACGCCTTCATCTTTTTGTGCATCT 440 649 475 Antisense
ATCTTCTACCTGGCTATGTGCCGTG 160 31 502 Antisense
ATGTGCCGTGTGCTCATCAAGGCCT 261 47 517 Antisense
CAAGGACTCTTCCACTACAATCGTG 493 183 583 Antisense
Sequence Source Affymetrix Proprietary Database