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[187263_at]

Description C03B8.3 /REP_DB=WormBase Gene ID /WP=CE00763 /TR=SW:Q11106 /GB=AAA50670.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 15      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 9.4
(-2.3)
A 		6.3
(-3)
A 		6.4
(-3)
A 		34.3
(3)
A 		28
B 39.1
(3)
M 		3.3
(-3)
A 		7.2
(-2.3)
A 		3.8
(-2.9)
A 		36
C 6.4
(-2.7)
A 		5.8
(-3)
A 		8.9
(-1.7)
A 		19.6
(3)
A 		14
avr 18.3
(2.6) 		5.1
(-3) 		7.5
(-2) 		19.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 11.9
(-2.3)
A 		6.2
(-3)
A 		23.3
(-0.9)
A 		26.4
(-0.6)
A 		56
(3)
P 		15.9
(-1.8)
A 		50
B 4.2
(-2.7)
A 		14.2
(-1.2)
A 		2.2
(-3)
A 		3.3
(-2.8)
A 		31
(1.3)
A 		42.1
(3)
P 		40
C 3.2
(-3)
A 		4.5
(-2.9)
A 		4.2
(-2.9)
A 		35.4
(0.6)
A 		20.1
(-1.1)
A 		57.3
(3)
P 		54
avr 6.4
(-3) 		8.3
(-2.6) 		9.9
(-2.3) 		21.7
(-0.1) 		35.7
(2.5) 		38.4
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.4
(0.3)
A 		1.4
(-3)
A 		1.7
(-2.5)
A 		5
(3)
A 		4
B 12.5
(3)
M 		0.8
(-3)
A 		1.7
(-2.5)
A 		0.8
(-3)
A 		12
C 2.1
(-1.5)
A 		1.7
(-3)
A 		3.1
(2.3)
A 		3.3
(3)
A 		2
avr 6
(3) 		1.3
(-3) 		2.2
(-1.9) 		3
(-0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.2
(-3)
A 		2.2
(-3)
A 		5.1
(-1.8)
A 		6.7
(-1.2)
A 		16.9
(3)
P 		3.9
(-2.3)
A 		15
B 1.4
(-2.6)
A 		4.7
(-1.3)
A 		0.5
(-3)
A 		0.9
(-2.8)
A 		12.6
(1.8)
A 		15.7
(3)
P 		15
C 1.2
(-3)
A 		1.4
(-2.9)
A 		1.1
(-3)
A 		7.1
(-1)
A 		6.5
(-1.2)
A 		19.2
(3)
P 		18
avr 1.6
(-3) 		2.8
(-2.4) 		2.2
(-2.7) 		4.9
(-1.2) 		12
(2.5) 		12.9
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6826
Sequence Type Exemplar sequence
Representative Public ID C03B8.3 NCBI
Target Description C03B8.3 /REP_DB=WormBase Gene ID /WP=CE00763 /TR=SW:Q11106 /GB=AAA50670.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066278 NCBI Caenorhabditis elegans C03B8.3 (C03B8.3) mRNA, complete cds. 11/11 None
SNAP00000029921 ENSEMBL cdna:SNAP chromosome:CEL140:III:7712375:7713350:1 11/11 None
GENEFINDER00000029924 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7712375:7716250:1 11/11 None
C03B8.3 ENSEMBL cdna:known chromosome:CEL140:III:7712375:7712869:1 gene:C03B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7712372-7712867(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B8.3
Entrez Gene 182155 Entrez gene
SwissProt Q11106 EMBL-EBI
WormBase CE00763 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50670 Hypothetical protein C03B8.3 [Caenorhabditis elegans] ref|NP_498679.1| C03B8.3 [Caenorhabditis elegans] sp|Q11106|YPB3_CAEEL Hypothetical protein B03B8.3 in chromosome III 4.0E-69
blast AAA50670 Hypothetical protein C03B8.3 [Caenorhabditis elegans] ref|NP_498679.1| C03B8.3 [Caenorhabditis elegans] sp|Q11106|YPB3_CAEEL Hypothetical protein B03B8.3 in chromosome III 1.0E-68
blast AAA50670 Hypothetical protein C03B8.3 [Caenorhabditis elegans] ref|NP_498679.1| C03B8.3 [Caenorhabditis elegans] sp|Q11106|YPB3_CAEEL Hypothetical protein B03B8.3 in chromosome III 6.0E-66
blast CAE57181 Hypothetical protein CBG00020 [Caenorhabditis briggsae] 1.0E-54
blast CAE57181 Hypothetical protein CBG00020 [Caenorhabditis briggsae] 3.0E-54
blast CAE57181 Hypothetical protein CBG00020 [Caenorhabditis briggsae] 2.0E-51
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:187263_AT
ccaacagattcgcaatttttcacgcggagttggtcacttacgtagaagagctgcaaaaaa
taacgtgataaaagttaggcctgaagagctccgcccatttttcaatcaatattctgttct
tccgaatggaatacaaaacgatgcagatgcaaagcttttttccaaggagctccaaccggg
agaacggaaacttttatttgatgctttgagaaagatcaccgccgatcagtataatgatca
caaaaaggtggtagaagttactattgatcatgaagatttagtaaaagtctggtatataaa
tttcattccaatgttcgtttacggatgtctcgatgaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACAGATTCGCAATTTTTCACGC 200 277 24 Antisense
ATTTTTCACGCGGAGTTGGTCACTT 646 13 38 Antisense
TGGTCACTTACGTAGAAGAGCTGCA 108 553 54 Antisense
AAGTTAGGCCTGAAGAGCTCCGCCC 374 157 95 Antisense
TTCAATCAATATTCTGTTCTTCCGA 593 683 124 Antisense
GATGCAGATGCAAAGCTTTTTTCCA 131 413 163 Antisense
TTTCCAAGGAGCTCCAACCGGGAGA 347 615 182 Antisense
GATGCTTTGAGAAAGATCACCGCCG 676 413 223 Antisense
GATCACCGCCGATCAGTATAATGAT 228 421 237 Antisense
TTTCATTCCAATGTTCGTTTACGGA 381 669 324 Antisense
CGTTTACGGATGTCTCGATGAAGCA 113 247 339 Antisense
Sequence Source Affymetrix Proprietary Database