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[187262_at]

Description T16H12.3 /REP_DB=WormBase Gene ID /WP=CE00324 /TR=SW:P34566 /GB=CAA83136.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_high_8_8 > 12      6grp_highest_nonorm > 81      6grp_total > 70      4grp_total > 12      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 184.8
(-1.5)
P 		181
(-1.6)
P 		129.2
(-3)
P 		345.9
(3)
P 		217
B 209.5
(0.9)
P 		182.3
(-0.3)
A 		125
(-3)
A 		254.1
(3)
P 		129
C 223.2
(1.4)
P 		153.1
(-3)
A 		187.7
(-0.8)
P 		248.5
(3)
P 		95
avr 205.8
(-0.4) 		172.1
(-1.9) 		147.3
(-3) 		282.8
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 270.4
(-0)
P 		208.4
(-3)
P 		214.7
(-2.7)
P 		333.6
(3)
P 		257.3
(-0.7)
P 		279.6
(0.4)
P 		125
B 330.8
(3)
P 		245.7
(-1.6)
P 		305.4
(1.6)
P 		278.8
(0.2)
P 		281.7
(0.3)
P 		220.7
(-3)
P 		110
C 199.4
(-3)
P 		304.3
(-0.3)
P 		280.3
(-0.9)
P 		429.3
(3)
P 		262.5
(-1.4)
P 		255.3
(-1.5)
P 		230
avr 266.9
(-2.1) 		252.8
(-2.9) 		266.8
(-2.1) 		347.2
(3) 		267.2
(-2) 		251.9
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 67.3
(3)
P 		39.3
(-2)
P 		33.8
(-3)
P 		50.6
(0)
P 		34
B 66.8
(3)
P 		45
(-0.5)
A 		29
(-3)
A 		54.1
(1)
P 		38
C 73.9
(3)
P 		44
(-2.6)
A 		65.4
(1.4)
P 		41.9
(-3)
P 		32
avr 69.3
(3) 		42.8
(-3) 		42.7
(-3) 		48.9
(-1.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 49.9
(-2.5)
P 		74.1
(1.3)
P 		46.8
(-3)
P 		84.6
(3)
P 		77.7
(1.9)
P 		68.1
(0.4)
P 		38
B 115.1
(3)
P 		81.8
(-1.8)
P 		74.2
(-3)
P 		73.9
(-3)
P 		114.5
(2.9)
P 		82.3
(-1.8)
P 		41
C 73.9
(-2.3)
P 		92.9
(3)
P 		71.3
(-3)
P 		86.3
(1.2)
P 		84.9
(0.8)
P 		85.5
(0.9)
P 		22
avr 79.6
(0.3) 		82.9
(1) 		64.1
(-3) 		81.6
(0.7) 		92.4
(3) 		78.6
(0.1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7292
Sequence Type Exemplar sequence
Representative Public ID T16H12.3 NCBI
Target Description T16H12.3 /REP_DB=WormBase Gene ID /WP=CE00324 /TR=SW:P34566 /GB=CAA83136.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027591(11), NM_001027592(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027591 NCBI Caenorhabditis elegans T16H12.3a (T16H12.3) mRNA, complete cds. 11/11 None
NM_001027592 NCBI Caenorhabditis elegans T16H12.3b (T16H12.3) mRNA, complete cds. 9/11 None
SNAP00000013066 ENSEMBL cdna:SNAP chromosome:CEL140:III:10081401:10083169:-1 11/11 None
GENEFINDER00000013076 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10081401:10083169:-1 11/11 None
T16H12.3a ENSEMBL cdna:known chromosome:CEL140:III:10081394:10083174:-1 gene:T16H12.3 11/11 None
T16H12.3b ENSEMBL cdna:known chromosome:CEL140:III:10081401:10083034:-1 gene:T16H12.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10081396-10083030(-) 100.0 100.0
Public Domain and Genome References
Ensembl T16H12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE52907 Hypothetical protein T16H12.3b [Caenorhabditis elegans] ref|NP_001022763.1| T16H12.3b [Caenorhabditis elegans] sp|P34566|YNV3_CAEEL Hypothetical protein T16H12.3 in chromosome III 1.0E-168
blast CAE52907 Hypothetical protein T16H12.3b [Caenorhabditis elegans] ref|NP_001022763.1| T16H12.3b [Caenorhabditis elegans] sp|P34566|YNV3_CAEEL Hypothetical protein T16H12.3 in chromosome III 1.0E-162
blast CAA83136 Hypothetical protein T16H12.3a [Caenorhabditis elegans] ref|NP_001022762.1| T16H12.3a [Caenorhabditis elegans] 1.0E-157
blast CAA83136 Hypothetical protein T16H12.3a [Caenorhabditis elegans] ref|NP_001022762.1| T16H12.3a [Caenorhabditis elegans] 1.0E-147
blast CAE52907 Hypothetical protein T16H12.3b [Caenorhabditis elegans] ref|NP_001022763.1| T16H12.3b [Caenorhabditis elegans] sp|P34566|YNV3_CAEEL Hypothetical protein T16H12.3 in chromosome III 1.0E-123
blast CAA83136 Hypothetical protein T16H12.3a [Caenorhabditis elegans] ref|NP_001022762.1| T16H12.3a [Caenorhabditis elegans] 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:187262_AT
tttcttccagaaagtcctccgaattttcctggctttaacgacaatgtatcccgttcaatt
accaattttattggatattttgcgcttcacacaatcaggcaccattgctacgtaaacttc
ggagtcgacggcgagctgaagttttatcaacggaatatgtataaaaaagcttttgacgac
ttgagagttaacaaagccaaaccaactgtcagtgttaaaccagaagcatcacttaaaaga
gagccaaaagcagagactccgacgcttacacgagtcaaaccagagatccgtaacgactcg
gacgaggatttctgtgaaataattgagcctgctgtcaagaaatccaaaactcggcaaaca
tcggaaagcaatgccaaaggtggaaaagaattgaaagatttcccggaaaaatatatgctt
gaagacctcgacaaagacgaccttcccatgaacttcaagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTCCAGAAAGTCCTCCGAATT 200 671 454 Antisense
GAATTTTCCTGGCTTTAACGACAAT 531 99 474 Antisense
GACAATGTATCCCGTTCAATTACCA 402 365 493 Antisense
TATTGGATATTTTGCGCTTCACACA 581 665 522 Antisense
GCTTCACACAATCAGGCACCATTGC 366 305 537 Antisense
GGCACCATTGCTACGTAAACTTCGG 22 533 551 Antisense
ACTTCGGAGTCGACGGCGAGCTGAA 498 101 569 Antisense
GAGACTCCGACGCTTACACGAGTCA 669 391 706 Antisense
GACTCGGACGAGGATTTCTGTGAAA 377 373 748 Antisense
GAAGACCTCGACAAAGACGACCTTC 578 337 874 Antisense
CGACCTTCCCATGAACTTCAAGACC 613 249 891 Antisense
Sequence Source Affymetrix Proprietary Database