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[187260_s_at]

Description ZK1320.2 /REP_DB=WormBase Gene ID /WP=CE01700 /TR=SW:Q09364 /GB=CAA87040.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 27      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7147
1 2 3 4 range
A 6380.1
(1.2)
P 		8506.5
(3)
P 		7419.2
(2.1)
P 		1498.3
(-3)
P 		7008
B 6826.3
(2.1)
P 		7817.1
(3)
P 		7806.3
(3)
P 		1367.7
(-3)
P 		6449
C 6512.4
(2)
P 		7494.6
(3)
P 		6686.9
(2.2)
P 		1359.7
(-3)
P 		6135
avr 6572.9
(1.7) 		7939.4
(3) 		7304.1
(2.4) 		1408.6
(-3) 		6531

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7520
1 2 3 4 5 6 range
A 6412.2
(-1.4)
P 		8797.8
(0.5)
P 		11920.3
(3)
P 		9302.7
(0.9)
P 		6267.1
(-1.5)
P 		4400.3
(-3)
P 		7520
B 5910.7
(-1.6)
P 		7450.5
(0.1)
P 		9996.5
(3)
P 		7977.5
(0.7)
P 		6808.8
(-0.6)
P 		4677.8
(-3)
P 		5319
C 6323.5
(-2.1)
P 		7541.5
(-0.8)
P 		11002.2
(3)
P 		9156.4
(1)
P 		6768.6
(-1.6)
P 		5506.1
(-3)
P 		5496
avr 6215.5
(-1.7) 		7929.9
(0) 		10973
(3) 		8812.2
(0.9) 		6614.8
(-1.3) 		4861.4
(-3) 		6112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2111
1 2 3 4 range
A 2323
(3)
P 		1846.5
(1.6)
P 		1939.5
(1.9)
P 		219.3
(-3)
P 		2104
B 2176.9
(3)
P 		1930.6
(2.2)
P 		1808.9
(1.8)
P 		291.5
(-3)
P 		1885
C 2155.8
(2.5)
P 		2154.7
(2.5)
P 		2330.6
(3)
P 		229.3
(-3)
P 		2101
avr 2218.6
(3) 		1977.3
(2.3) 		2026.3
(2.4) 		246.7
(-3) 		1972

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2058
1 2 3 4 5 6 range
A 1182
(-2.7)
P 		3128.9
(3)
P 		2596
(1.4)
P 		2359.4
(0.8)
P 		1891.1
(-0.6)
P 		1071.3
(-3)
P 		2058
B 2056.6
(-1.2)
P 		2480
(1.3)
P 		2427.4
(1)
P 		2113
(-0.8)
P 		2766.3
(3)
P 		1744.3
(-3)
P 		1022
C 2343.9
(0.1)
P 		2301.1
(-0.1)
P 		2800.2
(3)
P 		1841.4
(-3)
P 		2190.2
(-0.8)
P 		1843.2
(-3)
P 		959
avr 1860.8
(-1.3) 		2636.7
(3) 		2607.9
(2.8) 		2104.6
(0.1) 		2282.5
(1) 		1552.9
(-3) 		1084
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187260_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3714
Sequence Type Exemplar sequence
Representative Public ID ZK1320.2 NCBI
Target Description ZK1320.2 /REP_DB=WormBase Gene ID /WP=CE01700 /TR=SW:Q09364 /GB=CAA87040.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063682 NCBI Caenorhabditis elegans ZK1320.2 (ZK1320.2) mRNA, complete cds. 11/11 None
SNAP00000038580 ENSEMBL cdna:SNAP chromosome:CEL140:II:9657860:9658909:-1 11/11 None
GENEFINDER00000038594 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9657860:9658909:-1 11/11 None
ZK1320.2.1 ENSEMBL cdna:known chromosome:CEL140:II:9657787:9658922:-1 gene:ZK1320.2 11/11 None
ZK1320.2.2 ENSEMBL cdna:known chromosome:CEL140:II:9657789:9658913:-1 gene:ZK1320.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9657856-9658906(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1320.2
Entrez Gene 174520 Entrez gene
SwissProt Q09364 EMBL-EBI
WormBase CE01700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87040 Hypothetical protein ZK1320.2 [Caenorhabditis elegans] ref|NP_496083.1| ZK1320.2 [Caenorhabditis elegans] sp|Q09364|YS22_CAEEL Hypothetical protein ZK1320.2 in chromosome II 1.0E-111
blast CAA87041 Hypothetical protein ZK1320.3 [Caenorhabditis elegans] ref|NP_496084.1| ZK1320.3 [Caenorhabditis elegans] sp|Q09365|YS23_CAEEL Hypothetical protein ZK1320.3 in chromosome II 1.0E-92
Sequence
Target Sequence 
>C. ELEGANS:187260_S_AT
tctccttgcctgcttagcagttccagcaatttttgctcaacaaacttctgctccaggagg
aaatttgtgcaattatactccagttggagatgaatccacacaggatgcagttccaattca
agatttccgatcctctggattggattttgtgagaccaaattggtgcatcactcactgtgc
tgaccgcaaatccgtcaaggttgctgcacgtttccaatttgccaatcagtcaactgcagt
tccaacctacaatgttcgccgtcactacacccgtaaatctggagtcaaggttcatgctga
gctgatcagcggcactccaaccaagcgcgatgatgatgatttcaatttctgcatcgacga
cactgtttctgcaacaatcgatacggttgttaagacttacaatgacatcgaaaccatgtc
agaggctctcaacttctatatcaataagccaggatgggcttatgtcatctatgatatggg
agttccaccaagcgtcattggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCTTGCCTGCTTAGCAGTTCCA 230 611 24 Antisense
TTTTGCTCAACAAACTTCTGCTCCA 68 679 54 Antisense
GATGCAGTTCCAATTCAAGATTTCC 491 411 127 Antisense
TCAAGATTTCCGATCCTCTGGATTG 206 631 141 Antisense
TGCTGACCGCAAATCCGTCAAGGTT 298 577 201 Antisense
GTCAAGGTTGCTGCACGTTTCCAAT 650 463 217 Antisense
GTCACTACACCCGTAAATCTGGAGT 484 465 284 Antisense
CACTCCAACCAAGCGCGATGATGAT 90 197 336 Antisense
GCATCGACGACACTGTTTCTGCAAC 283 307 374 Antisense
CGAAACCATGTCAGAGGCTCTCAAC 324 253 432 Antisense
GGAGTTCCACCAAGCGTCATTGGAA 8 519 502 Antisense
Sequence Source Affymetrix Proprietary Database