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[187256_at]

Description C16C10.9 /REP_DB=WormBase Gene ID /WP=CE01500 /TR=SW:Q09465 /GB=CAA86747.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 29.9
(3)
A 		12.2
(-3)
A 		19.2
(-0.6)
A 		18.7
(-0.8)
A 		18
B 50.7
(3)
A 		10.5
(-2.2)
A 		14.3
(-1.7)
A 		4.7
(-3)
A 		46
C 49.3
(2)
P 		14.7
(-2.7)
A 		12.4
(-3)
A 		56.3
(3)
A 		44
avr 43.3
(3) 		12.5
(-3) 		15.3
(-2.5) 		26.6
(-0.3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 10
(-1.5)
A 		13.8
(-0.5)
A 		6.8
(-2.4)
A 		7.2
(-2.3)
A 		27.5
(3)
A 		4.3
(-3)
A 		23
B 36.6
(2.7)
A 		38
(3)
A 		11.6
(-2.4)
A 		15.8
(-1.6)
A 		8.8
(-3)
A 		9
(-3)
A 		29
C 11.1
(-1)
A 		25.5
(3)
A 		24.7
(2.8)
A 		16.8
(0.6)
A 		3.7
(-3)
A 		25.5
(3)
A 		22
avr 19.2
(-0.1) 		25.8
(3) 		14.4
(-2.3) 		13.3
(-2.8) 		13.3
(-2.8) 		12.9
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.9
(3)
A 		2.6
(-3)
A 		5
(-1.3)
A 		2.7
(-2.9)
A 		8
B 16.2
(3)
A 		2.6
(-2.4)
A 		3.3
(-2.1)
A 		1
(-3)
A 		15
C 16.3
(3)
P 		4.2
(-3)
A 		4.3
(-3)
A 		9.5
(-0.4)
A 		12
avr 14.5
(3) 		3.1
(-3) 		4.2
(-2.4) 		4.4
(-2.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.8
(-2.3)
A 		4.9
(0.2)
A 		1.5
(-2.6)
A 		1.8
(-2.3)
A 		8.3
(3)
A 		1
(-3)
A 		7
B 12.7
(3)
A 		12.6
(2.9)
A 		2.8
(-3)
A 		4.2
(-2.2)
A 		3.6
(-2.5)
A 		3.4
(-2.6)
A 		10
C 4.1
(-0.6)
A 		7.8
(2.4)
A 		6.3
(1.2)
A 		3.4
(-1.2)
A 		1.2
(-3)
A 		8.5
(3)
A 		7
avr 6.2
(0.5) 		8.4
(3) 		3.5
(-2.5) 		3.1
(-3) 		4.4
(-1.5) 		4.3
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7715
Sequence Type Exemplar sequence
Representative Public ID C16C10.9 NCBI
Target Description C16C10.9 /REP_DB=WormBase Gene ID /WP=CE01500 /TR=SW:Q09465 /GB=CAA86747.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065427 NCBI Caenorhabditis elegans C16C10.9 (C16C10.9) mRNA, complete cds. 11/11 None
SNAP00000043769 ENSEMBL cdna:SNAP chromosome:CEL140:III:4155359:4157351:-1 10/11 None
GENEFINDER00000043783 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4155359:4157351:-1 11/11 None
C16C10.9 ENSEMBL cdna:known chromosome:CEL140:III:4155359:4157351:-1 gene:C16C10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4155358-4157351(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C10.9
Entrez Gene 182682 Entrez gene
SwissProt Q09465 EMBL-EBI
WormBase CE01500 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86747 Hypothetical protein C16C10.9 [Caenorhabditis elegans] ref|NP_497828.1| C16C10.9 [Caenorhabditis elegans] sp|Q09465|YQ59_CAEEL Hypothetical protein C16C10.9 in chromosome III 1.0E-156
blast CAA86747 Hypothetical protein C16C10.9 [Caenorhabditis elegans] ref|NP_497828.1| C16C10.9 [Caenorhabditis elegans] sp|Q09465|YQ59_CAEEL Hypothetical protein C16C10.9 in chromosome III 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:187256_AT
ccgcccgtgttctacagtagtacaatctactttttgtacaaacaggcgacttgtcaaaga
atgggcccgatttatctgcaacagcttggtaacgttgtgactctccgtataaaggaaaac
tatccggccatcaagactatctcggattatccttctttgaaatcaattattgaattttat
agtcgcttcgaaatgggaaatggtccggattttttcgtcaaaaaagaagagtcacaaaga
cagtttgaggttgtccttggcgaggcgtttcagtacatcaacttgtttcacaagaaacac
gggacaccacctgcacctccacagtttctgattaaattctgcattctcatgcatcaacta
ggatttcaagaatggacagccgagagctttgacgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCCGTGTTCTACAGTAGTACAA 52 263 343 Antisense
AGAATGGGCCCGATTTATCTGCAAC 442 75 400 Antisense
AGCTTGGTAACGTTGTGACTCTCCG 580 75 425 Antisense
AACTATCCGGCCATCAAGACTATCT 24 139 460 Antisense
GACTATCTCGGATTATCCTTCTTTG 236 373 477 Antisense
AGTTTGAGGTTGTCCTTGGCGAGGC 506 61 584 Antisense
CTTGGCGAGGCGTTTCAGTACATCA 55 219 598 Antisense
ACAAGAAACACGGGACACCACCTGC 373 109 632 Antisense
CTGCACCTCCACAGTTTCTGATTAA 307 237 653 Antisense
GCATTCTCATGCATCAACTAGGATT 679 307 683 Antisense
ATGGACAGCCGAGAGCTTTGACGTA 284 51 714 Antisense
Sequence Source Affymetrix Proprietary Database