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[187255_at]

Description D2024.3 /REP_DB=WormBase Gene ID /WP=CE04292 /TR=SW:P49191 /GB=AAA82288.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_total > 55      4grp_total > 60      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 556
1 2 3 4 range
A 534
(1.5)
P 		658
(3)
P 		570.9
(2)
P 		151.5
(-3)
P 		507
B 523.3
(1.9)
P 		400.7
(0.3)
P 		602
(3)
P 		155.8
(-3)
P 		446
C 524.7
(3)
P 		483.5
(2.4)
P 		497.4
(2.6)
P 		101.8
(-3)
P 		423
avr 527.3
(2.6) 		514.1
(2.4) 		556.8
(3) 		136.4
(-3) 		420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 44.3
(-0)
A 		1.6
(-3)
A 		87.9
(3)
P 		3.1
(-2.9)
A 		2.1
(-3)
A 		14
(-2.1)
A 		86
B 47.7
(-0.6)
A 		36.5
(-1.1)
A 		45
(-0.7)
A 		25.3
(-1.7)
A 		1.2
(-3)
A 		115.4
(3)
P 		114
C 2.3
(-3)
A 		36.4
(0.4)
A 		46
(1.3)
A 		9.6
(-2.3)
A 		33.8
(0.1)
A 		63.3
(3)
P 		61
avr 31.4
(-0.8) 		24.8
(-1.6) 		59.6
(2.5) 		12.7
(-3) 		12.4
(-3) 		64.2
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 194.4
(3)
P 		142.8
(1.2)
P 		149.2
(1.4)
P 		22.2
(-3)
P 		172
B 166.9
(3)
P 		99
(-0)
P 		139.5
(1.8)
P 		33.2
(-3)
P 		134
C 173.7
(3)
P 		139
(1.7)
P 		173.4
(3)
P 		17.2
(-3)
P 		157
avr 178.3
(3) 		126.9
(1) 		154
(2.1) 		24.2
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8.2
(-0.5)
A 		0.6
(-3)
A 		19.1
(3)
P 		0.8
(-2.9)
A 		0.6
(-3)
A 		3.4
(-2.1)
A 		19
B 16.6
(-0.7)
A 		12.2
(-1.3)
A 		10.9
(-1.5)
A 		6.7
(-2.1)
A 		0.5
(-3)
A 		43
(3)
P 		43
C 0.9
(-3)
A 		11.1
(0)
A 		11.7
(0.2)
A 		1.9
(-2.7)
A 		10.9
(-0)
A 		21.2
(3)
P 		20
avr 8.6
(-1.3) 		8
(-1.5) 		13.9
(0.3) 		3.1
(-3) 		4
(-2.7) 		22.5
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9494
Sequence Type Exemplar sequence
Representative Public ID D2024.3 NCBI
Target Description D2024.3 /REP_DB=WormBase Gene ID /WP=CE04292 /TR=SW:P49191 /GB=AAA82288.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068746(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068746 NCBI Caenorhabditis elegans fatty acid ELOngation family member (elo-3) (elo-3) mRNA, complete cds. 9/11 None
SNAP00000033326 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7237712:7239880:1 9/11 None
D2024.3 ENSEMBL cdna:known chromosome:CEL140:IV:7237712:7239880:1 gene:D2024.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033333 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7237717-7239886(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol elo-3
Ensembl D2024.3
Entrez Gene 183948 Entrez gene
SwissProt P49191 EMBL-EBI
WormBase CE34783 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588197_AT similar to ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) cfa
CANINE_2:CFAAFFX.17954.1.S1_AT similar to ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) cfa
DROSOPHILA_2:1637773_S_AT dm
DROSGENOME1:153694_AT dm
CHICKEN:GGA.7376.1.S1_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) gga
CHICKEN:GGAAFFX.12469.1.S1_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) gga
CHICKEN:GGAAFFX.12469.1.S1_S_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) gga
HG-U95B:44328_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U133_PLUS_2:210868_S_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U133A:210868_S_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U133A_2:210868_S_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U133_PLUS_2:204256_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U133A_2:204256_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U133A:204256_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HU35KSUBB:RC_N51054_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HU35KSUBB:RC_AA233837_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
U133_X3P:G13129087_3P_X_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
U133_X3P:G13129087_3P_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
U133_X3P:G12654918_3P_A_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U95AV2:40943_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U95B:45605_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U95AV2:39481_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U95B:49721_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U95C:63684_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U95C:64861_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HG-U95D:86640_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HU35KSUBB:RC_T23759_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
HU35KSUBC:RC_W88954_AT ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) hs
MU11KSUBA:AA561252_S_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MU11KSUBA:C76452_RC_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MG-U74AV2:94418_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MG-U74AV2:103665_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MOE430A:1417404_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MOUSE430A_2:1417404_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MOUSE430_2:1417404_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MOE430A:1417403_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MOUSE430A_2:1417403_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MOUSE430_2:1417403_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) mm
MOE430B:1445062_AT Myelination associated SUR4-like protein (Masr) mm
MOUSE430_2:1445062_AT Myelination associated SUR4-like protein (Masr) mm
MOE430B:1445578_AT Myelination associated SUR4-like protein (Masr) mm
MOUSE430_2:1445578_AT Myelination associated SUR4-like protein (Masr) mm
MU19KSUBB:TC32396_AT Myelination associated SUR4-like protein (Masr) mm
RAT230_2:1394401_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
RAE230B:1394401_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
RG-U34C:RC_AI145640_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
RAE230A:1388108_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
RAT230_2:1388108_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
RAE230B:1382677_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
RAT230_2:1382677_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
RG-U34C:RC_AI102536_AT ELOVL family member 6, elongation of long chain fatty acids (yeast) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501147 fatty acid ELOngation family member (elo-3) [Caenorhabditis elegans] gb|AAA82288.2| Fatty acid elongation protein 3 [Caenorhabditis elegans] sp|P49191|ELO3_CAEEL Putative fatty acid elongation protein 1.0E-179
blast CAE61841 Hypothetical protein CBG05815 [Caenorhabditis briggsae] 1.0E-172
blast EAL30565 GA17812-PA [Drosophila pseudoobscura] 6.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002076 EMBL-EBI GNS1/SUR4 membrane protein 5.1E-24
Pfam IPR002076 EMBL-EBI GNS1/SUR4 membrane protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501147.2 6 38-55,70-87,146-164,174-193,206-228,243-265
D2024.3 6 38-55,70-87,146-164,174-193,206-228,243-265
SNAP00000033326 6 38-55,70-87,146-164,174-193,206-228,243-265
Sequence
Target Sequence 
>C. ELEGANS:187255_AT
tcttcgttctctgaaattccgtcttccaaaacaaatggcaatggttgttactactctcca
acttgctcaaatggttatgggagtaatcatcggagtcactgtctaccgtatcaagtcatc
gggtgaatactgccaacagacatgggacaatttgggattatgctttggagtttatttcac
atatttccttcttttcgccaacttcttctaccatgcatatgttaagaaaaacaaccgtac
agtaaattatgaaaataattcaaaaaatttccccgatctcgttttaatttacctgagaaa
aaaggtttcaagaaaatcgaaaaatcggcaatgttcagaaaataattataaaattcaatt
ttcatcaaattttgttaatgttgatggaaaaaaacataagaaaacatatgaacttattct
tccaagaagaaaaatgaccacaattttaacttttctatttggaaaaaatcgaattttttc
gaaatatcagaaaaatcgaaaaaacatttcgattcctgttgatttcgaaattctggagcc
aaaagaagatatcaatgctaacatcgctgagccatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTTCTCTGAAATTCCGTCTT 604 617 693 Antisense
GAAATTCCGTCTTCCAAAACAAATG 492 363 705 Antisense
GGCAATGGTTGTTACTACTCTCCAA 265 535 729 Antisense
GTAATCATCGGAGTCACTGTCTACC 252 463 775 Antisense
CACTGTCTACCGTATCAAGTCATCG 163 199 789 Antisense
GTCATCGGGTGAATACTGCCAACAG 157 467 807 Antisense
TTATTTCACATATTTCCTTCTTTTC 651 679 864 Antisense
CCAACTTCTTCTACCATGCATATGT 284 277 890 Antisense
CCGATCTCGTTTTAATTTACCTGAG 198 263 965 Antisense
AACATTTCGATTCCTGTTGATTTCG 627 137 1195 Antisense
ATGCTAACATCGCTGAGCCATCCAT 496 41 1247 Antisense
Sequence Source Affymetrix Proprietary Database