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[187253_at]

Description F59B2.10 /REP_DB=WormBase Gene ID /WP=CE00226 /TR=SW:P34485 /GB=CAA77587.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.3
(-2.7)
A 		22.4
(3)
A 		2.2
(-3)
A 		6.3
(-1.8)
A 		20
B 2.9
(-3)
A 		9.1
(3)
A 		3.9
(-2)
A 		6.8
(0.8)
A 		6
C 3.6
(-3)
A 		6
(-2)
A 		18.4
(3)
A 		10.1
(-0.4)
A 		15
avr 3.3
(-3) 		12.5
(3) 		8.2
(0.2) 		7.7
(-0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 22.1
(3)
A 		5.8
(-2)
A 		7.2
(-1.6)
A 		3.5
(-2.8)
A 		2.7
(-3)
A 		2.7
(-3)
A 		19
B 4
(3)
A 		3.9
(2.8)
A 		3
(1.1)
A 		1.4
(-1.9)
A 		2.4
(-0)
A 		0.8
(-3)
A 		3
C 2.2
(-3)
A 		12.6
(0.4)
A 		3
(-2.7)
A 		5.7
(-1.8)
A 		20.3
(3)
A 		3.2
(-2.7)
A 		18
avr 9.4
(3) 		7.4
(1.3) 		4.4
(-1.2) 		3.5
(-1.9) 		8.5
(2.3) 		2.2
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-2.2)
A 		4.9
(3)
A 		0.6
(-3)
A 		0.9
(-2.6)
A 		4
B 0.9
(-3)
A 		2.3
(3)
A 		0.9
(-3)
A 		1.4
(-0.9)
A 		1
C 1.2
(-3)
A 		1.7
(-2.4)
A 		6.4
(3)
A 		1.7
(-2.4)
A 		5
avr 1.1
(-3) 		3
(3) 		2.6
(1.7) 		1.3
(-2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.1
(3)
A 		2.1
(-0.4)
A 		1.6
(-1.3)
A 		0.9
(-2.5)
A 		0.8
(-2.7)
A 		0.6
(-3)
A 		4
B 1.4
(3)
A 		1.3
(2.5)
A 		0.7
(-0.8)
A 		0.4
(-2.5)
A 		1
(0.8)
A 		0.3
(-3)
A 		1
C 0.8
(-3)
A 		3.8
(0.1)
A 		0.8
(-3)
A 		1.1
(-2.7)
A 		6.6
(3)
A 		1.1
(-2.7)
A 		6
avr 2.1
(1) 		2.4
(1.9) 		1
(-2.1) 		0.8
(-2.7) 		2.8
(3) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6868
Sequence Type Exemplar sequence
Representative Public ID F59B2.10 NCBI
Target Description F59B2.10 /REP_DB=WormBase Gene ID /WP=CE00226 /TR=SW:P34485 /GB=CAA77587.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066596
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000012579 ENSEMBL cdna:SNAP chromosome:CEL140:III:9012342:9016867:1 None
GENEFINDER00000012584 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9012909:9020759:1 None
F59B2.11 ENSEMBL cdna:known chromosome:CEL140:III:9012909:9016867:1 gene:F59B2.11 None
NM_066596 NCBI Caenorhabditis elegans F59B2.11 (F59B2.11) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9012904-9013439(+) 62.15 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B2.11
Entrez Gene 186596 Entrez gene
SwissProt P34486 EMBL-EBI
WormBase CE37775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77581 Hypothetical protein F59B2.12 [Caenorhabditis elegans] ref|NP_498998.1| F59B2.12 [Caenorhabditis elegans] sp|P34487|YMJB_CAEEL Hypothetical protein F59B2.12 in chromosome III 0.0
blast S31132 hypothetical protein F59B2.12 - Caenorhabditis elegans 0.0
blast CAE62718 Hypothetical protein CBG06873 [Caenorhabditis briggsae] 0.0
blast CAA77588 Hypothetical protein F59B2.11 [Caenorhabditis elegans] ref|NP_498997.2| F59B2.11 [Caenorhabditis elegans] sp|P34486|YMJA_CAEEL Hypothetical protein F59B2.11 in chromosome III precursor 1.0E-170
blast CAA77588 Hypothetical protein F59B2.11 [Caenorhabditis elegans] ref|NP_498997.2| F59B2.11 [Caenorhabditis elegans] sp|P34486|YMJA_CAEEL Hypothetical protein F59B2.11 in chromosome III precursor 1.0E-153
blast S31131 hypothetical protein F59B2.11 - Caenorhabditis elegans 4.0E-98
blast S31131 hypothetical protein F59B2.11 - Caenorhabditis elegans 9.0E-87
Sequence
Target Sequence 
>C. ELEGANS:187253_AT
gactgcttactttaacaatctcatctttacttcttttaacaatttttgttgatgcaagta
cgaaattccgaagaagttgtcgtcgtcgcaacggaaataatggtgtaaatggatcgaatg
aagatggagaaaataataatgtagatggaaatgacggaaagggtggaaaaggagctctca
gtcaagatgctatccaaaataatgatgatttagttgaaaatagttttacgttaaaaaaaa
gttccaaaaattactcaaccactgctccaaagtcgctatctgacgagagaatgcaccaat
tagcacacttata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCTTACTTTAACAATCTCATC 340 375 17 Antisense
AACAATCTCATCTTTACTTCTTTTA 264 135 30 Antisense
TGTTGATGCAAGTACGAAATTCCGA 371 563 63 Antisense
ATTCCGAAGAAGTTGTCGTCGTCGC 682 7 81 Antisense
GAAGTTGTCGTCGTCGCAACGGAAA 512 337 89 Antisense
GTCGTCGCAACGGAAATAATGGTGT 279 473 98 Antisense
GGAGCTCTCAGTCAAGATGCTATCC 466 521 187 Antisense
CAAAAATTACTCAACCACTGCTCCA 485 191 261 Antisense
CACTGCTCCAAAGTCGCTATCTGAC 147 199 276 Antisense
GCTATCTGACGAGAGAATGCACCAA 704 303 291 Antisense
GAATGCACCAATTAGCACACTTATA 169 331 305 Antisense
Sequence Source Affymetrix Proprietary Database