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[187251_at]

Description B0353.1 /REP_DB=WormBase Gene ID /WP=CE27571 /TR=SW:Q10958 /GB=AAA64290.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 281
1 2 3 4 range
A 217.1
(1.8)
P 		235.3
(2.7)
A 		126.4
(-3)
P 		240.9
(3)
A 		115
B 288.3
(2.6)
P 		298.8
(3)
A 		149.8
(-3)
P 		176.5
(-1.9)
A 		149
C 407
(3)
M 		380.7
(2.1)
A 		265.1
(-1.9)
A 		231.5
(-3)
A 		176
avr 304.1
(3) 		304.9
(3) 		180.4
(-3) 		216.3
(-1.3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 200.4
(-1.8)
P 		328.1
(3)
P 		171.7
(-2.9)
A 		167.7
(-3)
M 		249.9
(0.1)
P 		261.3
(0.5)
A 		160
B 381.6
(3)
P 		230.4
(-1.3)
A 		218.9
(-1.6)
A 		267
(-0.2)
A 		242.9
(-0.9)
A 		168.4
(-3)
A 		213
C 360.8
(3)
P 		258.9
(-0.3)
A 		250.7
(-0.5)
A 		181.3
(-2.7)
A 		339.9
(2.3)
P 		172.9
(-3)
P 		188
avr 314.3
(3) 		272.5
(0.8) 		213.8
(-2.3) 		205.3
(-2.8) 		277.6
(1.1) 		200.9
(-3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 79
(3)
P 		51.1
(-0.6)
A 		33.1
(-3)
P 		35.3
(-2.7)
A 		46
B 91.9
(3)
P 		73.8
(1.1)
A 		34.7
(-3)
P 		37.6
(-2.7)
A 		57
C 134.7
(3)
M 		109.5
(1.4)
A 		92.4
(0.3)
A 		39
(-3)
A 		96
avr 101.9
(3) 		78.1
(0.8) 		53.4
(-1.5) 		37.3
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 36.9
(-3)
P 		116.7
(3)
P 		37.4
(-3)
A 		42.5
(-2.6)
M 		75.4
(-0.1)
P 		63.6
(-1)
A 		80
B 132.8
(3)
P 		76.7
(-1.2)
A 		53.1
(-3)
A 		70.7
(-1.7)
A 		98.7
(0.4)
A 		62.8
(-2.3)
A 		80
C 133.7
(3)
P 		79
(-0.4)
A 		63.8
(-1.3)
A 		36.5
(-3)
A 		110
(1.5)
P 		57.9
(-1.7)
P 		97
avr 101.1
(3) 		90.8
(1.8) 		51.4
(-2.8) 		49.9
(-3) 		94.7
(2.3) 		61.4
(-1.7) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8281
Sequence Type Exemplar sequence
Representative Public ID B0353.1 NCBI
Target Description B0353.1 /REP_DB=WormBase Gene ID /WP=CE27571 /TR=SW:Q10958 /GB=AAA64290.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064809 NCBI Caenorhabditis elegans B0353.1 (B0353.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030211 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:560144:572130:1 11/11 None
B0353.1 ENSEMBL cdna:known chromosome:CEL140:III:560137:572134:1 gene:B0353.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030208 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:565592-572134(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0353.1
Entrez Gene 175209 Entrez gene
SwissProt Q10958 EMBL-EBI
WormBase CE27571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64290 Hypothetical protein B0353.1 [Caenorhabditis elegans] ref|NP_497210.1| B0353.1 [Caenorhabditis elegans] sp|Q10958|YT31_CAEEL Hypothetical protein B0353.1 in chromosome III 8.0E-49
blast AAA64290 Hypothetical protein B0353.1 [Caenorhabditis elegans] ref|NP_497210.1| B0353.1 [Caenorhabditis elegans] sp|Q10958|YT31_CAEEL Hypothetical protein B0353.1 in chromosome III 1.0E-44
blast CAE69235 Hypothetical protein CBG15277 [Caenorhabditis briggsae] 3.0E-38
blast CAE69235 Hypothetical protein CBG15277 [Caenorhabditis briggsae] 9.0E-38
Sequence
Target Sequence 
>C. ELEGANS:187251_AT
gttgcatagaagtccatctggggcaaagcggaagattcggcagaagagggaagaagcgtc
ccgcccgtctccattcctctccccatcaagttcatcatctcaaacttcgatatctccgac
accaacagaaacatcttcaaattatcgatcactcgtagattcaggagattatcaatcgat
tcttccggatttcgacccatcatttgtacctgtgccaactcctagactctccgtgccatt
ctcagcttcaatgagcacattggaactctcttcaagcactctcagctcaccagtgaccgc
tccggcgccacctccaccgccaacttctaaacccactgttgaggtccacccaatgccaac
tgatgagcgcagcccatcgatggcttcttctttgaacggatcaattgatatcgacattta
caagccaaagcctccagtgccaattaagccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCATAGAAGTCCATCTGGGGCA 702 437 15 Antisense
GAAGAGGGAAGAAGCGTCCCGCCCG 540 337 57 Antisense
TCCCCATCAAGTTCATCATCTCAAA 224 597 94 Antisense
CAAACTTCGATATCTCCGACACCAA 551 191 115 Antisense
CCGTGCCATTCTCAGCTTCAATGAG 510 265 245 Antisense
GCACATTGGAACTCTCTTCAAGCAC 300 317 269 Antisense
TCTAAACCCACTGTTGAGGTCCACC 418 569 340 Antisense
GTCCACCCAATGCCAACTGATGAGC 403 477 358 Antisense
CAACTGATGAGCGCAGCCCATCGAT 275 187 371 Antisense
GACATTTACAAGCCAAAGCCTCCAG 545 369 427 Antisense
AAGCCTCCAGTGCCAATTAAGCCAA 664 147 442 Antisense
Sequence Source Affymetrix Proprietary Database