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[187250_at]

Description ZK632.11 /REP_DB=WormBase Gene ID /WP=CE00417 /TR=SW:P34656 /GB=CAA80186.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 82      6grp_total > 78      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 345.2
(-2.5)
P 		406.4
(-1.5)
P 		317.2
(-3)
P 		664.6
(3)
P 		347
B 435.6
(-0.3)
P 		365.8
(-1.6)
P 		289.2
(-3)
P 		620.4
(3)
P 		331
C 402.8
(-1.5)
P 		332.8
(-2.6)
P 		310.5
(-3)
P 		674.1
(3)
P 		364
avr 394.5
(-1.5) 		368.3
(-1.9) 		305.6
(-3) 		653
(3) 		347

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 455.8
(2.6)
P 		288.9
(-3)
P 		397.7
(0.6)
P 		414.2
(1.2)
P 		346.1
(-1.1)
P 		468.6
(3)
P 		180
B 335.4
(-1.6)
P 		325.8
(-1.9)
P 		284.9
(-3)
P 		312.7
(-2.3)
P 		454.1
(1.6)
P 		507.8
(3)
P 		223
C 322.4
(-3)
P 		343
(-2)
P 		334.6
(-2.4)
P 		327.8
(-2.7)
P 		383.8
(-0.1)
P 		447.7
(3)
P 		125
avr 371.2
(-1) 		319.2
(-3) 		339.1
(-2.2) 		351.6
(-1.7) 		394.7
(-0.1) 		474.7
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 125.7
(3)
P 		88.2
(-2.3)
P 		82.9
(-3)
P 		97.3
(-1)
P 		43
B 138.9
(3)
P 		90.3
(-1.1)
P 		67
(-3)
P 		132.2
(2.4)
P 		72
C 133.4
(3)
P 		95.7
(-3)
P 		108.2
(-1)
P 		113.7
(-0.1)
P 		38
avr 132.7
(3) 		91.4
(-2.3) 		86
(-3) 		114.4
(0.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 84
(-3)
P 		102.8
(0.7)
P 		86.6
(-2.5)
P 		105.1
(1.2)
P 		104.4
(1.1)
P 		114.1
(3)
P 		30
B 116.7
(-0.6)
P 		108.5
(-1)
P 		69.2
(-3)
P 		82.8
(-2.3)
P 		184.5
(2.8)
P 		189.3
(3)
P 		120
C 119.5
(0.8)
P 		104.7
(-0.2)
P 		85.2
(-1.6)
P 		65.9
(-3)
P 		124.2
(1.2)
P 		149.9
(3)
P 		84
avr 106.7
(-0.8) 		105.3
(-0.9) 		80.3
(-3) 		84.6
(-2.6) 		137.7
(1.9) 		151.1
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6717
Sequence Type Exemplar sequence
Representative Public ID ZK632.11 NCBI
Target Description ZK632.11 /REP_DB=WormBase Gene ID /WP=CE00417 /TR=SW:P34656 /GB=CAA80186.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066781 NCBI Caenorhabditis elegans ZK632.11 (ZK632.11) mRNA, complete cds. 11/11 None
SNAP00000031481 ENSEMBL cdna:SNAP chromosome:CEL140:III:9827812:9829506:1 11/11 None
ZK632.11 ENSEMBL cdna:known chromosome:CEL140:III:9827809:9829557:1 gene:ZK632.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9827807-9829502(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK632.11
Entrez Gene 176396 Entrez gene
SwissProt P34656 EMBL-EBI
WormBase CE00417 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80186 Hypothetical protein ZK632.11 [Caenorhabditis elegans] ref|NP_499182.1| ZK632.11 [Caenorhabditis elegans] sp|P34656|YOTA_CAEEL Hypothetical protein ZK632.11 in chromosome III 0.0
blast CAE65116 Hypothetical protein CBG09981 [Caenorhabditis briggsae] 1.0E-88
blast CAE74324 Hypothetical protein CBG22035 [Caenorhabditis briggsae] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR006568 EMBL-EBI PSP, proline-rich 3.3E-28
Sequence
Target Sequence 
>C. ELEGANS:187250_AT
gtgaagacttcaagattccaccaagagatgtattttgctcagtttatcaagatgaattgc
tgaaaatattcaagaaaagtgaaaaagcggagaaacgaagagccaaatcaactccgaaac
ataaaaagttcgctaatgaagatgatgatgatgttatagtaatcacaagtgatgaaatca
aaattgacaagttcaatactccgggagaagaagattccattataatactcgacggctctg
cttcaacagaagaaaaacaccttttgactccgattcgaaaagatgtaaaactaggagaat
cgatgtttgaattaatcggaactccagtgtttggtagctctcttcttactcctgttgctc
cacttgaagcgtttgccgtcggaattcaaccatttgaagcaagagaagaacttactggat
gcaagggaaacttcagaaatctcatggacaaattgaaagaaatccgcgaaaataacttcg
ttccggagcctgaagaagaagttattttggtttcaacgaatgaaatttcgtcgtcgaata
actctggaactgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAGACTTCAAGATTCCACCAAG 592 481 770 Antisense
GAAGAGCCAAATCAACTCCGAAACA 561 339 866 Antisense
TTGACAAGTTCAATACTCCGGGAGA 613 703 953 Antisense
TATAATACTCGACGGCTCTGCTTCA 119 659 990 Antisense
TCGACGGCTCTGCTTCAACAGAAGA 644 601 998 Antisense
CACCTTTTGACTCCGATTCGAAAAG 413 199 1027 Antisense
GGAACTCCAGTGTTTGGTAGCTCTC 39 531 1087 Antisense
TGTTGCTCCACTTGAAGCGTTTGCC 236 563 1122 Antisense
GTTTGCCGTCGGAATTCAACCATTT 100 447 1140 Antisense
ATAACTTCGTTCCGGAGCCTGAAGA 304 23 1241 Antisense
GTCGTCGAATAACTCTGGAACTGCT 169 473 1299 Antisense
Sequence Source Affymetrix Proprietary Database