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[187248_at]

Description C03C10.6 /REP_DB=WormBase Gene ID /WP=CE02959 /TR=SW:P42173 /GB=CAA84690.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 58      4grp_high_8_8 > 32      6grp_highest_nonorm > 40      6grp_total > 26      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1275
1 2 3 4 range
A 1621.9
(3)
P 		416.8
(-3)
P 		465.3
(-2.8)
P 		534
(-2.4)
P 		1205
B 1253.4
(3)
P 		545.8
(-1.7)
P 		346.7
(-3)
P 		373.5
(-2.8)
P 		907
C 1247.3
(3)
P 		566.3
(-1.9)
P 		406.3
(-3)
P 		426.3
(-2.9)
P 		841
avr 1374.2
(3) 		509.6
(-2.4) 		406.1
(-3) 		444.6
(-2.8) 		968

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1034
1 2 3 4 5 6 range
A 1089.9
(3)
P 		814.3
(0.8)
P 		482.1
(-1.9)
P 		343.8
(-3)
P 		377
(-2.7)
P 		353.3
(-2.9)
P 		746
B 1323
(3)
P 		939.5
(0.7)
P 		516.6
(-1.8)
P 		432.8
(-2.2)
P 		305.4
(-3)
P 		482.3
(-2)
P 		1018
C 742.5
(0.9)
P 		990.3
(3)
P 		563.4
(-0.7)
P 		289.1
(-3)
P 		304.9
(-2.9)
P 		424.3
(-1.8)
P 		701
avr 1051.8
(3) 		914.7
(1.9) 		520.7
(-1.4) 		355.2
(-2.8) 		329.1
(-3) 		420
(-2.2) 		723
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 590.5
(3)
P 		90.5
(-2.9)
P 		121.6
(-2.5)
P 		78.2
(-3)
P 		512
B 399.7
(3)
P 		134.8
(-2)
P 		80.3
(-3)
P 		79.6
(-3)
P 		320
C 412.9
(3)
P 		162.8
(-1.4)
P 		141.6
(-1.8)
P 		71.9
(-3)
P 		341
avr 467.7
(3) 		129.4
(-2.2) 		114.5
(-2.4) 		76.6
(-3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 200.9
(0.4)
P 		289.6
(3)
P 		105
(-2.4)
P 		87.2
(-3)
P 		113.8
(-2.2)
P 		86
(-3)
P 		204
B 460.3
(3)
P 		312.7
(0.4)
P 		125.5
(-2.8)
P 		114.6
(-3)
P 		124.1
(-2.8)
P 		179.8
(-1.9)
P 		346
C 275.2
(2.3)
P 		302.2
(3)
P 		143.4
(-0.9)
P 		58.1
(-3)
P 		98.7
(-2)
P 		142
(-0.9)
P 		244
avr 312.1
(3) 		301.5
(2.7) 		124.6
(-2) 		86.6
(-3) 		112.2
(-2.3) 		135.9
(-1.7) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187248_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6382
Sequence Type Exemplar sequence
Representative Public ID C03C10.6 NCBI
Target Description C03C10.6 /REP_DB=WormBase Gene ID /WP=CE02959 /TR=SW:P42173 /GB=CAA84690.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065416(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065416 NCBI Caenorhabditis elegans C03C10.6 (C03C10.6) mRNA, complete cds. 10/11 None
SNAP00000025503 ENSEMBL cdna:SNAP chromosome:CEL140:III:4081474:4082653:1 10/11 None
GENEFINDER00000025513 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4081474:4082653:1 10/11 None
C03C10.6 ENSEMBL cdna:known chromosome:CEL140:III:4078413:4082768:1 gene:C03C10.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4078669-4082653(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03C10.6
Entrez Gene 175523 Entrez gene
SwissProt P42173 EMBL-EBI
WormBase CE30720 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623267_AT dm
DROSGENOME1:151764_AT dm
CHICKEN:GGA.17164.1.S1_AT similar to KIAA1409 gga
CHICKEN:GGAAFFX.6855.1.S1_AT similar to KIAA1409 gga
CHICKEN:GGAAFFX.6871.1.S1_AT similar to KIAA1409 gga
HU35KSUBC:RC_R37473_AT KIAA1409 hs
U133_X3P:HS.267150.0.S1_3P_AT KIAA1409 hs
HG-U133_PLUS_2:229550_AT KIAA1409 hs
HG-U133B:229550_AT KIAA1409 hs
HG-U95B:54797_AT KIAA1409 hs
HG-U95D:73626_F_AT KIAA1409 hs
HG-U95E:78558_AT KIAA1409 hs
MG-U74BV2:108275_AT RIKEN cDNA 9030205A07 Gene mm
MOE430B:1457422_AT RIKEN cDNA 9030205A07 Gene mm
MOUSE430_2:1457422_AT RIKEN cDNA 9030205A07 Gene mm
RAE230B:1394760_AT similar to KIAA1409 protein (predicted) rn
RAT230_2:1394760_AT similar to KIAA1409 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA86235 Hypothetical protein C03C10.6 [Caenorhabditis elegans] emb|CAA84690.2| Hypothetical protein C03C10.6 [Caenorhabditis elegans] ref|NP_497817.2| C03C10.6 [Caenorhabditis elegans] sp|P42173|YKL6_CAEEL Hypothetical protein C03C10.6 in chromosome III 0.0
blast T18878 hypothetical protein C03C10.6 - Caenorhabditis elegans 0.0
blast CAE72891 Hypothetical protein CBG20204 [Caenorhabditis briggsae] 0.0
blast CAA86235 Hypothetical protein C03C10.6 [Caenorhabditis elegans] emb|CAA84690.2| Hypothetical protein C03C10.6 [Caenorhabditis elegans] ref|NP_497817.2| C03C10.6 [Caenorhabditis elegans] sp|P42173|YKL6_CAEEL Hypothetical protein C03C10.6 in chromosome III 1.0E-121
blast T18878 hypothetical protein C03C10.6 - Caenorhabditis elegans 1.0E-113
blast CAE72891 Hypothetical protein CBG20204 [Caenorhabditis briggsae] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:187248_AT
tatgtcagctctattccatgctttccatctatgtcaactatggactgtctattgtgaaag
agctgcaacttacagttctacaactgcttttgctcatttggttgatttctgggctcgtgt
aactcccgctattctacaacttctcagtcattcaaaagtggtacgaaaaaacttaagaaa
gtatggtctaaaatttttgaaatatttggctggcaacctagaagggcaggcatgtatgcc
tagagactccctagtggctcacagagcacatataaaccttatttatcaattgatagtgag
cataacaatttttcagctagccgacatggtcaacttgcactttctgaacacaatccaagc
tcttcaacaagtaaattctgctcttctctgtcaactttactcgatgtgggcacccatcct
gactgcctatcactcgcaaatacctaatcaattaagaatgaaactcgactcttgccaaaa
tcagccctccctggaagctccgttggtgacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTCAGCTCTATTCCATGCTTTC 184 657 2190 Antisense
CCATGCTTTCCATCTATGTCAACTA 509 271 2205 Antisense
AGTTCTACAACTGCTTTTGCTCATT 184 65 2263 Antisense
TTGATTTCTGGGCTCGTGTAACTCC 417 679 2291 Antisense
ATGCCTAGAGACTCCCTAGTGGCTC 490 39 2425 Antisense
GGTCAACTTGCACTTTCTGAACACA 244 503 2517 Antisense
AAGTAAATTCTGCTCTTCTCTGTCA 689 155 2558 Antisense
TCAACTTTACTCGATGTGGGCACCC 164 631 2580 Antisense
TGACTGCCTATCACTCGCAAATACC 70 571 2609 Antisense
ATGAAACTCGACTCTTGCCAAAATC 210 43 2647 Antisense
TCCCTGGAAGCTCCGTTGGTGACGG 541 595 2677 Antisense
Sequence Source Affymetrix Proprietary Database