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[187247_at]

Description F59B10.5 /REP_DB=WormBase Gene ID /WP=CE01594 /TR=SW:Q09953 /GB=CAA88599.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      6grp_highest_nonorm > 53      6grp_total > 81      4grp_total > 50      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1044
1 2 3 4 range
A 239.8
(-1.5)
P 		931.5
(3)
P 		908.1
(2.8)
P 		15.9
(-3)
A 		916
B 188.2
(-2.1)
P 		1060
(3)
P 		947.4
(2.3)
P 		25.3
(-3)
A 		1035
C 204.8
(-1.9)
P 		975
(3)
P 		912.7
(2.6)
P 		27.7
(-3)
A 		947
avr 210.9
(-1.8) 		988.8
(3) 		922.7
(2.6) 		23
(-3) 		966

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1445
1 2 3 4 5 6 range
A 339.1
(-2.6)
P 		606.1
(-1.4)
P 		605.2
(-1.4)
P 		1636.1
(3)
P 		1074.7
(0.6)
P 		235.3
(-3)
P 		1401
B 362
(-2.2)
P 		528
(-1.4)
P 		786.6
(-0.2)
P 		1480.3
(3)
P 		1084.1
(1.2)
P 		190.7
(-3)
P 		1290
C 339.3
(-2.3)
P 		541.1
(-1.3)
P 		668.9
(-0.6)
P 		1229.9
(2.4)
P 		1338.9
(3)
P 		217
(-3)
P 		1122
avr 346.8
(-2.4) 		558.4
(-1.3) 		686.9
(-0.7) 		1448.8
(3) 		1165.9
(1.6) 		214.3
(-3) 		1235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 87.3
(-0.8)
P 		202.2
(2.1)
P 		237.4
(3)
P 		2.3
(-3)
A 		235
B 60
(-1.7)
P 		261.8
(3)
P 		219.5
(2)
P 		5.4
(-3)
A 		256
C 67.8
(-1.8)
P 		280.3
(2.3)
P 		318.1
(3)
P 		4.7
(-3)
A 		313
avr 71.7
(-1.4) 		248.1
(2.8) 		258.3
(3) 		4.1
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 62.5
(-2.9)
P 		215.6
(-0.3)
P 		131.8
(-1.8)
P 		415
(3)
P 		324.3
(1.5)
P 		57.3
(-3)
P 		358
B 126
(-2.1)
P 		175.7
(-1.3)
P 		191
(-1.1)
P 		392.1
(2.2)
P 		440.4
(3)
P 		71.1
(-3)
P 		369
C 125.8
(-2.1)
P 		165.1
(-1.5)
P 		170.2
(-1.4)
P 		247.3
(-0.1)
P 		433.2
(3)
P 		72.6
(-3)
P 		361
avr 104.8
(-2.3) 		185.5
(-0.9) 		164.3
(-1.2) 		351.5
(2.1) 		399.3
(3) 		67
(-3) 		332
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3326
Sequence Type Exemplar sequence
Representative Public ID F59B10.5 NCBI
Target Description F59B10.5 /REP_DB=WormBase Gene ID /WP=CE01594 /TR=SW:Q09953 /GB=CAA88599.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063865 NCBI Caenorhabditis elegans F59B10.5 (F59B10.5) mRNA, complete cds. 11/11 None
SNAP00000006044 ENSEMBL cdna:SNAP chromosome:CEL140:II:10521862:10523047:-1 11/11 None
GENEFINDER00000006045 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10521862:10523047:-1 11/11 None
F59B10.5 ENSEMBL cdna:known chromosome:CEL140:II:10521698:10523101:-1 gene:F59B10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10521858-10523044(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B10.5
Entrez Gene 186599 Entrez gene
SwissProt Q09953 EMBL-EBI
WormBase CE01594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88599 Hypothetical protein F59B10.5 [Caenorhabditis elegans] ref|NP_496266.1| F59B10.5 [Caenorhabditis elegans] sp|Q09953|YSR5_CAEEL Hypothetical protein F59B10.5 in chromosome II precursor 2.0E-50
blast CAE59662 Hypothetical protein CBG03081 [Caenorhabditis briggsae] 3.0E-44
Sequence
Target Sequence 
>C. ELEGANS:187247_AT
cgtggctcttttcgtcatttgtgcctgtttcgacaagttctcattgagcaaggacaaggg
aaccagagccaatttgaagcacccgatctcccgccgagtccttcgatatgagcgttcggt
agcgtacgaagacttcccgacacctggagaaatgactccaaaatatgtaccaattatgga
ttttgcaaaagttcggccagaaattccatcaaaaacgaagcacaattctgagttcgccga
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGCTCTTTTCGTCATTTGTGCC 334 245 33 Antisense
TTCGTCATTTGTGCCTGTTTCGACA 370 695 43 Antisense
GCCTGTTTCGACAAGTTCTCATTGA 630 281 55 Antisense
AGGACAAGGGAACCAGAGCCAATTT 627 53 83 Antisense
GAGCCAATTTGAAGCACCCGATCTC 201 385 98 Antisense
CCGCCGAGTCCTTCGATATGAGCGT 242 263 123 Antisense
GATATGAGCGTTCGGTAGCGTACGA 56 425 137 Antisense
GTAGCGTACGAAGACTTCCCGACAC 244 457 151 Antisense
AGACTTCCCGACACCTGGAGAAATG 699 71 162 Antisense
AAAGTTCGGCCAGAAATTCCATCAA 547 121 220 Antisense
GAAGCACAATTCTGAGTTCGCCGAC 316 341 249 Antisense
Sequence Source Affymetrix Proprietary Database