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[187245_s_at]

Description ZK1320.3 /REP_DB=WormBase Gene ID /WP=CE01701 /TR=SW:Q09365 /GB=CAA87041.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 46      6grp_total > 40      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3085
1 2 3 4 range
A 3250
(0.5)
P 		4115.3
(2.2)
P 		4512.4
(3)
P 		1427.2
(-3)
P 		3085
B 3418.7
(0.8)
P 		3561.3
(1.1)
P 		4383.5
(3)
P 		1801.3
(-3)
P 		2582
C 3620.1
(1.4)
P 		4068.3
(2.4)
P 		4326.6
(3)
P 		1651.5
(-3)
P 		2675
avr 3429.6
(0.9) 		3915
(1.9) 		4407.5
(3) 		1626.7
(-3) 		2781

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2162
1 2 3 4 5 6 range
A 3576.2
(3)
P 		2931.8
(0.7)
P 		3580.1
(3)
P 		3487.6
(2.7)
P 		2747.4
(0.1)
P 		1860.7
(-3)
P 		1719
B 3150.2
(0)
P 		3244.9
(0.4)
P 		3805
(2.3)
P 		4023
(3)
P 		2797.9
(-1.1)
P 		2250.7
(-3)
P 		1772
C 2741.6
(-0.6)
P 		3261.7
(3)
P 		2842.4
(0.1)
P 		3227.7
(2.8)
P 		2460
(-2.5)
P 		2384.6
(-3)
P 		877
avr 3156
(1.2) 		3146.1
(1.2) 		3409.2
(2.3) 		3579.4
(3) 		2668.4
(-0.9) 		2165.3
(-3) 		1414
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1299
1 2 3 4 range
A 1183.3
(3)
P 		893.3
(1.2)
P 		1179.6
(3)
P 		208.9
(-3)
P 		974
B 1090.2
(3)
P 		879.6
(1.2)
P 		1015.7
(2.4)
P 		383.8
(-3)
P 		706
C 1198.3
(1.5)
P 		1169.6
(1.3)
P 		1507.9
(3)
P 		278.5
(-3)
P 		1229
avr 1157.3
(2.5) 		980.8
(1.4) 		1234.4
(3) 		290.4
(-3) 		944

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 684
1 2 3 4 5 6 range
A 659.3
(-0.9)
P 		1042.7
(3)
P 		779.7
(0.3)
P 		884.5
(1.4)
P 		829
(0.8)
P 		453
(-3)
P 		590
B 1096.1
(2.2)
P 		1080.1
(1.9)
P 		924
(-1.3)
P 		1065.6
(1.6)
P 		1136.7
(3)
P 		839.3
(-3)
P 		297
C 1016.2
(3)
P 		995.2
(2.7)
P 		723.4
(-1.8)
P 		649.1
(-3)
P 		796
(-0.6)
P 		798.3
(-0.6)
P 		367
avr 923.9
(1) 		1039.3
(3) 		809
(-1) 		866.4
(-0) 		920.6
(0.9) 		696.9
(-3) 		342
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187245_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3848
Sequence Type Exemplar sequence
Representative Public ID ZK1320.3 NCBI
Target Description ZK1320.3 /REP_DB=WormBase Gene ID /WP=CE01701 /TR=SW:Q09365 /GB=CAA87041.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063683 NCBI Caenorhabditis elegans ZK1320.3 (ZK1320.3) mRNA, complete cds. 11/11 None
SNAP00000038581 ENSEMBL cdna:SNAP chromosome:CEL140:II:9659196:9660326:-1 11/11 None
GENEFINDER00000038601 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9659196:9660326:-1 11/11 None
ZK1320.3.1 ENSEMBL cdna:known chromosome:CEL140:II:9659162:9660330:-1 gene:ZK1320.3 11/11 None
ZK1320.3.2 ENSEMBL cdna:known chromosome:CEL140:II:9659166:9660349:-1 gene:ZK1320.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9659192-9660323(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1320.3
Entrez Gene 174521 Entrez gene
SwissProt Q09365 EMBL-EBI
WormBase CE01701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87041 Hypothetical protein ZK1320.3 [Caenorhabditis elegans] ref|NP_496084.1| ZK1320.3 [Caenorhabditis elegans] sp|Q09365|YS23_CAEEL Hypothetical protein ZK1320.3 in chromosome II 1.0E-120
blast CAA87040 Hypothetical protein ZK1320.2 [Caenorhabditis elegans] ref|NP_496083.1| ZK1320.2 [Caenorhabditis elegans] sp|Q09364|YS22_CAEEL Hypothetical protein ZK1320.2 in chromosome II 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:187245_S_AT
agtttcttcttattgcttgtttggcagttcctgcaatcttagctcaacagacgtctgctc
caggtggaaatttgtgtacttatcctccacaaggagatgaatcaaaccaaaaggctgttc
ctattcaggacttcagaacgtctggattagatttcgttagaccaaattggtgcatcaccc
actgtgctgaccgcaaatctgtcaaagctgctgttcgcttccaatttgccaatcagtcaa
ctgcagtcccaacctacaaagttcgccgtactttcacccgttattcaggaatgaaggttc
atgctgagctgatcagcggaaacccgaccaagcgtgacgatgatccttttaacttctgta
tggacgatgctgtgtcggcccagattgatactattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTCTTCTTATTGCTTGTTTGGC 546 63 17 Antisense
TGGCAGTTCCTGCAATCTTAGCTCA 709 545 38 Antisense
TTAGCTCAACAGACGTCTGCTCCAG 401 681 55 Antisense
GGAAATTTGTGTACTTATCCTCCAC 476 527 82 Antisense
AGGCTGTTCCTATTCAGGACTTCAG 149 55 128 Antisense
CTGTCAAAGCTGCTGTTCGCTTCCA 545 239 215 Antisense
GTACTTTCACCCGTTATTCAGGAAT 239 459 284 Antisense
GAGCTGATCAGCGGAAACCCGACCA 200 387 322 Antisense
AAACCCGACCAAGCGTGACGATGAT 519 123 336 Antisense
TGTATGGACGATGCTGTGTCGGCCC 82 561 373 Antisense
GTGTCGGCCCAGATTGATACTATTG 211 485 388 Antisense
Sequence Source Affymetrix Proprietary Database