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[187242_at]

Description F59B10.6 /REP_DB=WormBase Gene ID /WP=CE01595 /TR=SW:Q09954 /GB=CAA88600.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 53      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 48.2
(3)
P 		44.9
(2.5)
A 		16.1
(-1.5)
A 		5.2
(-3)
A 		43
B 27.1
(-1.7)
A 		32.6
(0.9)
A 		24.3
(-3)
P 		37.1
(3)
A 		13
C 82.8
(3)
P 		60.8
(1)
P 		53.7
(0.3)
P 		17.6
(-3)
A 		65
avr 52.7
(3) 		46.1
(1.8) 		31.4
(-0.9) 		20
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 27
(-3)
A 		59.9
(2.7)
P 		52.4
(1.4)
P 		61.4
(3)
P 		33.9
(-1.8)
P 		41.3
(-0.5)
A 		34
B 50
(2.3)
P 		54.8
(3)
P 		54.7
(3)
P 		23.9
(-1.4)
M 		52.1
(2.6)
P 		12.7
(-3)
A 		42
C 84.8
(3)
P 		48.3
(0.3)
P 		48.8
(0.4)
M 		8.9
(-2.5)
A 		60.2
(1.2)
P 		2.2
(-3)
A 		83
avr 53.9
(2.9) 		54.3
(3) 		52
(2.6) 		31.4
(-0.9) 		48.7
(2.1) 		18.7
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17.6
(3)
P 		9.8
(0.2)
A 		4.2
(-1.8)
A 		0.8
(-3)
A 		17
B 8.6
(3)
A 		8.1
(2)
A 		5.6
(-3)
P 		7.9
(1.6)
A 		3
C 27.4
(3)
P 		17.5
(0.6)
P 		18.7
(0.9)
P 		3
(-3)
A 		24
avr 17.9
(3) 		11.8
(0.4) 		9.5
(-0.6) 		3.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 5
(-3)
A 		21.3
(3)
P 		11.4
(-0.6)
P 		15.6
(0.9)
P 		10.2
(-1.1)
P 		10.1
(-1.1)
A 		16
B 17.4
(1.6)
P 		18.2
(1.9)
P 		13.3
(0.1)
P 		6.3
(-2.4)
M 		21.2
(3)
P 		4.7
(-3)
A 		17
C 31.4
(3)
P 		14.7
(-0.3)
P 		12.4
(-0.7)
M 		1.8
(-2.8)
A 		19.5
(0.7)
P 		0.7
(-3)
A 		31
avr 17.9
(2.9) 		18.1
(3) 		12.4
(0.3) 		7.9
(-1.7) 		17
(2.5) 		5.2
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3751
Sequence Type Exemplar sequence
Representative Public ID F59B10.6 NCBI
Target Description F59B10.6 /REP_DB=WormBase Gene ID /WP=CE01595 /TR=SW:Q09954 /GB=CAA88600.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063866 NCBI Caenorhabditis elegans F59B10.6 (F59B10.6) mRNA, complete cds. 11/11 None
F59B10.6 ENSEMBL cdna:known chromosome:CEL140:II:10523184:10524384:-1 gene:F59B10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006050 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10523180-10524381(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B10.6
Entrez Gene 174617 Entrez gene
SwissProt Q09954 EMBL-EBI
WormBase CE01595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88600 Hypothetical protein F59B10.6 [Caenorhabditis elegans] ref|NP_496267.1| F59B10.6 [Caenorhabditis elegans] sp|Q09954|YSR6_CAEEL Hypothetical protein F59B10.6 in chromosome II 1.0E-54
blast CAE59661 Hypothetical protein CBG03080 [Caenorhabditis briggsae] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496267.1 1 29-51
F59B10.6 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:187242_AT
tatggaatcatataaacctgcaattgatctacttttcgatgaagtttctcaaattttttg
gattgttctatttttctacgttattgtgtcaatgatttggattatgtattgctgttatat
taacaaaatggagctcagtctagtcgagaaaaagatcgaggagaatggagtggcacgatc
aaaagaattacagagactcctcgacgcctacaacaaaataacggcagaaaatccaactgc
acc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGAATCATATAAACCTGCAATT 58 655 45 Antisense
AACCTGCAATTGATCTACTTTTCGA 475 147 59 Antisense
GATCTACTTTTCGATGAAGTTTCTC 402 419 70 Antisense
GGATTGTTCTATTTTTCTACGTTAT 238 507 104 Antisense
ATTTTTCTACGTTATTGTGTCAATG 421 13 114 Antisense
GATTTGGATTATGTATTGCTGTTAT 171 427 138 Antisense
ACAAAATGGAGCTCAGTCTAGTCGA 634 109 167 Antisense
GGAGTGGCACGATCAAAAGAATTAC 218 513 211 Antisense
AGAATTACAGAGACTCCTCGACGCC 640 71 228 Antisense
TCCTCGACGCCTACAACAAAATAAC 284 591 242 Antisense
TAACGGCAGAAAATCCAACTGCACC 302 639 263 Antisense
Sequence Source Affymetrix Proprietary Database