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[187241_s_at]

Description C16C10.6 /REP_DB=WormBase Gene ID /WP=CE01497 /TR=SW:Q09252 /GB=CAA86744.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 65      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 91      6grp_total > 65      4grp_total > 03      6grp_highest_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 574
1 2 3 4 range
A 198.1
(-2.3)
P 		217.8
(-2.1)
P 		133.8
(-3)
P 		684
(3)
P 		550
B 282.4
(-1.6)
P 		191.8
(-2.6)
P 		155
(-3)
P 		707.8
(3)
P 		553
C 259
(-1.7)
P 		150.9
(-3)
P 		203.5
(-2.4)
P 		648.3
(3)
P 		497
avr 246.5
(-2) 		186.8
(-2.7) 		164.1
(-3) 		680
(3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 224.3
(1.3)
P 		151.9
(-3)
P 		226.6
(1.4)
P 		226.6
(1.4)
P 		168.5
(-2)
P 		253.3
(3)
P 		101
B 275.4
(2.4)
P 		158.5
(-3)
P 		250.3
(1.3)
P 		230
(0.3)
P 		196.2
(-1.2)
P 		287.3
(3)
P 		129
C 224
(1.4)
P 		184
(-0.3)
P 		227.6
(1.5)
P 		262.2
(3)
P 		119.4
(-3)
P 		251.3
(2.5)
P 		143
avr 241.2
(1.7) 		164.8
(-2.8) 		234.8
(1.3) 		239.6
(1.6) 		161.4
(-3) 		264
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 72.1
(0.4)
P 		47.3
(-1.9)
P 		35
(-3)
P 		100.1
(3)
P 		65
B 90.1
(-0.2)
P 		47.4
(-2.4)
P 		35.9
(-3)
P 		150.8
(3)
P 		115
C 85.8
(0.9)
P 		43.4
(-3)
P 		70.9
(-0.5)
P 		109.3
(3)
P 		66
avr 82.7
(-0) 		46
(-3) 		47.3
(-2.9) 		120.1
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 41.3
(-3)
P 		54
(0.7)
P 		49.3
(-0.6)
P 		57.5
(1.8)
P 		50.8
(-0.2)
P 		61.7
(3)
P 		20
B 95.8
(1.7)
P 		52.8
(-3)
P 		60.8
(-2.1)
P 		60.9
(-2.1)
P 		79.7
(-0)
P 		107.2
(3)
P 		54
C 83
(2.9)
P 		56.2
(-0.7)
P 		57.9
(-0.5)
P 		52.7
(-1.1)
P 		38.6
(-3)
P 		84.1
(3)
P 		46
avr 73.4
(0.8) 		54.3
(-3) 		56
(-2.7) 		57
(-2.5) 		56.4
(-2.6) 		84.3
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187241_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8012
Sequence Type Exemplar sequence
Representative Public ID C16C10.6 NCBI
Target Description C16C10.6 /REP_DB=WormBase Gene ID /WP=CE01497 /TR=SW:Q09252 /GB=CAA86744.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065430 NCBI Caenorhabditis elegans C16C10.6 (C16C10.6) mRNA, complete cds. 11/11 None
SNAP00000043772 ENSEMBL cdna:SNAP chromosome:CEL140:III:4164514:4168736:-1 11/11 None
GENEFINDER00000043787 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4164514:4168736:-1 11/11 None
C16C10.6 ENSEMBL cdna:known chromosome:CEL140:III:4166915:4168736:-1 gene:C16C10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4167021-4168736(-) 99.75 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C10.6
Entrez Gene 175533 Entrez gene
SwissProt Q09252 EMBL-EBI
WormBase CE01497 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265627_AT expressed protein at
CANINE:1603265_AT similar to CG15747-PA cfa
CANINE:1592581_AT similar to CG15747-PA cfa
CANINE_2:CFA.9846.1.A1_X_AT similar to CG15747-PA cfa
CANINE_2:CFAAFFX.28983.1.S1_AT similar to CG15747-PA cfa
DROSOPHILA_2:1635052_A_AT dm
DROSOPHILA_2:1632401_AT dm
DROSGENOME1:153269_AT dm
CHICKEN:GGA.12555.1.S1_S_AT similar to hypothetical protein DKFZp434K1421 gga
CHICKEN:GGA.2139.1.S1_A_AT similar to hypothetical protein DKFZp434K1421 gga
CHICKEN:GGAAFFX.2588.1.S1_AT similar to hypothetical protein DKFZp434K1421 gga
CHICKEN:GGAAFFX.2588.1.S1_X_AT similar to hypothetical protein DKFZp434K1421 gga
HG-U133B:223236_AT hypothetical protein DKFZp434K1421 hs
HG-U133_PLUS_2:223236_AT hypothetical protein DKFZp434K1421 hs
HU35KSUBA:RC_AA252033_AT hypothetical protein DKFZp434K1421 hs
U133_X3P:G12053122_3P_AT hypothetical protein DKFZp434K1421 hs
HG-U95B:53869_I_AT hypothetical protein DKFZp434K1421 hs
HG-U95B:53871_R_AT hypothetical protein DKFZp434K1421 hs
HG-U95E:72871_AT hypothetical protein DKFZp434K1421 hs
HG-U95E:72873_AT hypothetical protein DKFZp434K1421 hs
HG-U95E:78528_AT hypothetical protein DKFZp434K1421 hs
HG-U95E:70251_I_AT Hypothetical protein DKFZp434K1421 hs
HG-U95E:70253_R_AT Hypothetical protein DKFZp434K1421 hs
HU35KSUBC:RC_T79607_AT Hypothetical protein DKFZp434K1421 hs
MOE430B:1455738_AT expressed sequence AI851076 mm
MOUSE430_2:1455738_AT expressed sequence AI851076 mm
MG-U74BV2:108304_AT expressed sequence AI851076 mm
MG-U74BV2:114092_AT expressed sequence AI851076 mm
MG-U74CV2:138567_AT expressed sequence AI851076 mm
MOE430B:1439046_AT expressed sequence AI851076 mm
MOUSE430_2:1439046_AT expressed sequence AI851076 mm
MU19KSUBA:TC16887_AT Expressed sequence AI851076 (AI851076), mRNA mm
MU19KSUBB:TC29487_AT Expressed sequence AI851076 (AI851076), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA86744 Hypothetical protein C16C10.6 [Caenorhabditis elegans] ref|NP_497831.1| C16C10.6 [Caenorhabditis elegans] sp|Q09252|YQ56_CAEEL Hypothetical protein C16C10.6 in chromosome III 1.0E-168
blast CAA86744 Hypothetical protein C16C10.6 [Caenorhabditis elegans] ref|NP_497831.1| C16C10.6 [Caenorhabditis elegans] sp|Q09252|YQ56_CAEEL Hypothetical protein C16C10.6 in chromosome III 1.0E-165
blast CAE72854 Hypothetical protein CBG20153 [Caenorhabditis briggsae] 1.0E-124
blast CAE72854 Hypothetical protein CBG20153 [Caenorhabditis briggsae] 1.0E-123
blast CAE72854 Hypothetical protein CBG20153 [Caenorhabditis briggsae] 1.0E-121
blast CAA86745 Hypothetical protein C16C10.7 [Caenorhabditis elegans] ref|NP_497830.1| RiNg Finger protein family member (rnf-5) [Caenorhabditis elegans] sp|Q09463|RNF5_CAEEL RING finger protein 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.2E-16
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.2E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000043772 2 532-554,609-626
GENEFINDER00000043787 2 568-590,645-662
Sequence
Target Sequence 
>C. ELEGANS:187241_S_AT
ggacgcttttaaacgatttggcaagagatcctacagctattaaacagaggaagaaagagc
agaaaaatgtgagaaaacgggaagattctgatgaagaaattgatccgaaaccggaaaaat
cggataagaaaccagccgaaaagcttaaaaaatcaatttattccgatgattctgacgagg
aaaaagcaccaaaacctccacaaaaaaatttcgaaggagatcttaaacctggcctgaata
cggtatcaaaaaaaaaagcaacgactcacgcagagagaatccgtcagcgaaactacactc
caacacctccatcttcagatgatgaaggtgcaagagctccacgagctcggagaaggactt
caagcccgtcaccaacttcaaggaagtccatagaatcgagagaatcagggagtagaagat
cgcctgaaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGCTTTTAAACGATTTGGCAAG 334 523 566 Antisense
TTGGCAAGAGATCCTACAGCTATTA 250 709 583 Antisense
AATTTATTCCGATGATTCTGACGAG 550 173 720 Antisense
GAAGGAGATCTTAAACCTGGCCTGA 173 335 778 Antisense
AAACCTGGCCTGAATACGGTATCAA 673 123 790 Antisense
ACGACTCACGCAGAGAGAATCCGTC 285 93 826 Antisense
AGAATCCGTCAGCGAAACTACACTC 494 73 841 Antisense
TCCAACACCTCCATCTTCAGATGAT 661 587 864 Antisense
TGAAGGTGCAAGAGCTCCACGAGCT 612 575 888 Antisense
GCCCGTCACCAACTTCAAGGAAGTC 54 287 929 Antisense
GGGAGTAGAAGATCGCCTGAAGGGA 674 405 973 Antisense
Sequence Source Affymetrix Proprietary Database