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[187240_s_at]

Description Y45G12C.11 /REP_DB=WormBase Gene ID /WP=CE21944 /TR=Q9N4Y1 /GB=AAF60585.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 0.9
(-3)
A 		26.5
(2.2)
A 		1.6
(-2.9)
A 		30.5
(3)
A 		30
B 6.9
(3)
A 		5.8
(1.3)
A 		3.1
(-3)
A 		4.9
(-0.2)
A 		4
C 12.5
(3)
A 		11.3
(2.1)
A 		4.2
(-3)
A 		9.2
(0.6)
A 		8
avr 6.8
(-1.1) 		14.5
(2.8) 		3
(-3) 		14.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 6
(-2.1)
A 		19.7
(3)
A 		16.4
(1.8)
A 		11.4
(-0.1)
A 		3.7
(-3)
A 		5.3
(-2.4)
A 		16
B 12
(-0.7)
A 		2.2
(-3)
A 		28
(3)
A 		2.3
(-3)
A 		9.8
(-1.2)
A 		12
(-0.7)
A 		26
C 0.6
(-3)
A 		18.4
(3)
A 		3.5
(-2)
A 		17
(2.5)
A 		8.9
(-0.2)
A 		2.1
(-2.5)
A 		18
avr 6.2
(-3) 		13.4
(1.4) 		16
(3) 		10.2
(-0.6) 		7.5
(-2.2) 		6.5
(-2.8) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.3
(-3)
A 		5.8
(3)
A 		0.4
(-2.9)
A 		4.5
(1.6)
A 		6
B 2.2
(3)
A 		1.4
(-0.2)
A 		0.7
(-3)
A 		1
(-1.8)
A 		2
C 4.1
(3)
A 		3.3
(1.2)
A 		1.5
(-3)
A 		1.6
(-2.8)
A 		3
avr 2.2
(0) 		3.5
(3) 		0.9
(-3) 		2.4
(0.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.1
(-3)
A 		7
(3)
A 		3.6
(-0.5)
A 		2.9
(-1.2)
A 		1.1
(-3)
A 		1.3
(-2.8)
A 		6
B 4.2
(0.5)
A 		0.7
(-2.9)
A 		6.8
(3)
A 		0.6
(-3)
A 		4
(0.3)
A 		4.5
(0.8)
A 		6
C 0.2
(-3)
A 		5.6
(3)
A 		0.9
(-2.2)
A 		3.4
(0.6)
A 		2.9
(0)
A 		0.7
(-2.4)
A 		5
avr 1.8
(-3) 		4.4
(3) 		3.8
(1.6) 		2.3
(-1.8) 		2.7
(-0.9) 		2.2
(-2.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187240_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15337
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.11 NCBI
Target Description Y45G12C.11 /REP_DB=WormBase Gene ID /WP=CE21944 /TR=Q9N4Y1 /GB=AAF60585.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071269(11), NM_071296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071269 NCBI Caenorhabditis elegans F56A4.6 (F56A4.6) mRNA, complete cds. 11/11 None
NM_071296 NCBI Caenorhabditis elegans Y45G12C.11 (Y45G12C.11) mRNA, complete cds. 11/11 None
SNAP00000032940 ENSEMBL cdna:SNAP chromosome:CEL140:V:2440259:2450048:-1 10/11 None
GENEFINDER00000032961 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2440120:2445966:-1 11/11 None
SNAP00000043312 ENSEMBL cdna:SNAP chromosome:CEL140:V:2544168:2558327:-1 10/11 None
GENEFINDER00000043335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2548399:2554245:-1 11/11 None
F56A4.6 ENSEMBL cdna:known chromosome:CEL140:V:2440120:2445966:-1 gene:F56A4.6 11/11 None
Y45G12C.11 ENSEMBL cdna:known chromosome:CEL140:V:2548399:2554245:-1 gene:Y45G12C.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2440119-2445966(-) 99.54 100.0
chrV:2548398-2554245(-) 99.54 100.0
Public Domain and Genome References
Gene Title

Ensembl F56A4.6
Y45G12C.11
Entrez Gene 186349 Entrez gene
189939 Entrez gene
SwissProt Q9N5R5 EMBL-EBI
Q9N4Y1 EMBL-EBI
WormBase CE38523 Wormbase
CE32257 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15033_AT expressed protein at
ATH1-121501:260501_AT expressed protein at
Protein Similarities
Method ID Description E-Value
blast AAF39844 Hypothetical protein F56A4.6 [Caenorhabditis elegans] ref|NP_503670.2| F56A4.6 [Caenorhabditis elegans] 0.0
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 0.0
blast AAD32270 Hypothetical protein F02C9.2 [Caenorhabditis elegans] ref|NP_503859.2| F02C9.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 3.4E-121
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 3.4E-121
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503670.2 1 12-34
NP_503697.2 1 12-34
F56A4.6 1 12-34
Y45G12C.11 1 12-34
SNAP00000032940 2 5-27,48-70
GENEFINDER00000032961 1 12-34
SNAP00000043312 2 5-27,48-70
GENEFINDER00000043335 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:187240_S_AT
gacgacacggtgttcaatatttggcaacgtatcgattattcgcgagtacaccatttaact
ggggtcacttatgaggacagtgtgggatggtggaggtctccggaatttggactgagcgcc
gctcaaaaaattgtaaatttcgtcaatggcagtactgacccaaaaattgctgaaacatgg
gcaaggttcaaaagtggattgactgcaaatgggtatctaatgaataattggactgtgaat
aatgaaatgacatcgggttttggaagaagtgtttctgatttcttctacatcccaacatct
gaaagtgaatattacgcgagcctcatgagaatattctacgagaacaatctatttctggag
attgcagttaacaagtttctcaagtctgtgaattttcaaacatccctgtctggaaactcc
agttatttgtgggacaatgacagaaatatttgggacacgctttacagtagggacatggtt
gcaatgcatccactgaaactgagcgcggtaaaaacgcccaatgaagatagaattaggtac
tgtacgacaataattcagtcatgggctgatatcattttcgggggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACACGGTGTTCAATATTTGGC 567 379 1777 Antisense
GGCAACGTATCGATTATTCGCGAGT 262 535 1799 Antisense
GAGTACACCATTTAACTGGGGTCAC 706 387 1820 Antisense
GTGTGGGATGGTGGAGGTCTCCGGA 456 487 1856 Antisense
GTCTCCGGAATTTGGACTGAGCGCC 252 469 1872 Antisense
TTCGTCAATGGCAGTACTGACCCAA 296 695 1915 Antisense
GTGAATATTACGCGAGCCTCATGAG 566 481 2081 Antisense
AAACATCCCTGTCTGGAAACTCCAG 406 117 2174 Antisense
AATGCATCCACTGAAACTGAGCGCG 122 165 2259 Antisense
CTGAGCGCGGTAAAAACGCCCAATG 589 67 2275 Antisense
GGGCTGATATCATTTTCGGGGGATC 245 493 2339 Antisense
Sequence Source Affymetrix Proprietary Database