[Home] | [Total List]

[187239_at]

Description F44E2.8 /REP_DB=WormBase Gene ID /WP=CE00186 /TR=SW:P34438 /GB=AAA28037.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 88      6grp_total > 86      4grp_total > 58      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 933
(-0.7)
P 		907.7
(-0.9)
P 		1310.6
(3)
P 		697.9
(-3)
P 		613
B 912.8
(-2.4)
P 		1040.3
(0.8)
P 		1123.9
(3)
P 		891
(-3)
P 		233
C 849.6
(-1.3)
P 		1310.2
(3)
P 		1104.4
(1.1)
P 		671.8
(-3)
P 		638
avr 898.5
(-1) 		1086.1
(1.7) 		1179.6
(3) 		753.6
(-3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 971
1 2 3 4 5 6 range
A 1105
(-2.5)
P 		1186.7
(-1.9)
P 		1030.2
(-3)
P 		1339.3
(-0.8)
P 		1320.3
(-1)
P 		1889.3
(3)
P 		859
B 943.1
(-3)
P 		1167.2
(-0.3)
P 		939.1
(-3)
P 		1183.8
(-0.1)
P 		1262.1
(0.8)
P 		1448.8
(3)
P 		510
C 918.7
(-3)
P 		1053.4
(-1.6)
P 		1400.1
(1.9)
P 		1393.8
(1.8)
P 		1423.6
(2.1)
P 		1507.4
(3)
P 		589
avr 988.9
(-3) 		1135.8
(-1.6) 		1123.1
(-1.7) 		1305.6
(0) 		1335.3
(0.3) 		1615.2
(3) 		626
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 339.7
(2.9)
P 		197
(-0.6)
P 		342.6
(3)
P 		102.2
(-3)
P 		240
B 291.1
(3)
P 		256.9
(1)
P 		260.4
(1.2)
P 		189.9
(-3)
P 		101
C 281.2
(0.7)
P 		376.7
(2.8)
P 		384.9
(3)
P 		113.3
(-3)
P 		272
avr 304
(2.2) 		276.9
(1.4) 		329.3
(3) 		135.1
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 203.7
(-3)
P 		422
(2.1)
P 		224.4
(-2.5)
P 		339.7
(0.2)
P 		398.4
(1.6)
P 		460
(3)
P 		256
B 328.1
(-1.1)
P 		388.5
(0.1)
P 		228
(-3)
P 		313.5
(-1.4)
P 		512.8
(2.5)
P 		540.3
(3)
P 		312
C 340.5
(-1.4)
P 		321.4
(-1.9)
P 		356.4
(-1)
P 		280.3
(-3)
P 		460.7
(1.8)
P 		504.6
(3)
P 		224
avr 290.8
(-2.5) 		377.3
(-0.2) 		269.6
(-3) 		311.2
(-1.9) 		457.3
(1.9) 		501.6
(3) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8018
Sequence Type Exemplar sequence
Representative Public ID F44E2.8 NCBI
Target Description F44E2.8 /REP_DB=WormBase Gene ID /WP=CE00186 /TR=SW:P34438 /GB=AAA28037.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066555(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066555 NCBI Caenorhabditis elegans F44E2.8 (F44E2.8) mRNA, complete cds. 10/11 None
SNAP00000040004 ENSEMBL cdna:SNAP chromosome:CEL140:III:8848701:8849771:-1 11/11 None
GENEFINDER00000040015 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8848701:8849771:-1 11/11 None
F44E2.8 ENSEMBL cdna:known chromosome:CEL140:III:8848535:8849771:-1 gene:F44E2.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8848696-8849767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44E2.8
Entrez Gene 176246 Entrez gene
SwissProt P34438 EMBL-EBI
WormBase CE32420 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28037 Hypothetical protein F44E2.8 [Caenorhabditis elegans] ref|NP_498956.2| F44E2.8 [Caenorhabditis elegans] sp|P34438|YL58_CAEEL Hypothetical protein F44E2.8 in chromosome III 1.0E-136
blast AAA28037 Hypothetical protein F44E2.8 [Caenorhabditis elegans] ref|NP_498956.2| F44E2.8 [Caenorhabditis elegans] sp|P34438|YL58_CAEEL Hypothetical protein F44E2.8 in chromosome III 1.0E-115
blast CAE62746 Hypothetical protein CBG06909 [Caenorhabditis briggsae] 2.0E-90
blast CAE62746 Hypothetical protein CBG06909 [Caenorhabditis briggsae] 6.0E-87
blast CAE62746 Hypothetical protein CBG06909 [Caenorhabditis briggsae] 7.0E-80
blast CAE59562 Hypothetical protein CBG02959 [Caenorhabditis briggsae] 8.0E-21
Sequence
Target Sequence 
>C. ELEGANS:187239_AT
gtcgttgctcttccatctgaaataaagtcccgtgaacttccgatcgccccggacaatgta
gtctacttcaatggtcctactcattatctgtctgcactctacccgtgtactgttgttgtg
gatggaaatgagtataactcggttgagcattactatcaagcatgcaaactctatgtgctc
actggtgaacagtctgctgctcagttgaaagcctctgaaactccgatcgaggtgaagaaa
gcgacgaagaatattttgaaagaggcgaagattccagccaaaaagatctccgcttggaag
gacaaggacagtatcgctgtgctcaagcatgttatttatcacaaattcaatcaaaacgat
gagctgaaagtcaagcttctcgataccggagacaaaatcctcattcagacttatatcgga
gacacgtacttcgctgccggcgccaatgccaagtatacgagcacttgggtggatcgccat
gtcaatcagagcctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTTGCTCTTCCATCTGAAATAA 366 473 319 Antisense
ATAAAGTCCCGTGAACTTCCGATCG 143 1 340 Antisense
ATCGCCCCGGACAATGTAGTCTACT 123 37 361 Antisense
AATGGTCCTACTCATTATCTGTCTG 684 161 388 Antisense
CACTCTACCCGTGTACTGTTGTTGT 180 197 413 Antisense
TGGTGAACAGTCTGCTGCTCAGTTG 449 553 501 Antisense
GTTGAAAGCCTCTGAAACTCCGATC 277 435 522 Antisense
GAAAGTCAAGCTTCTCGATACCGGA 24 361 684 Antisense
ATATCGGAGACACGTACTTCGCTGC 272 19 731 Antisense
GAGCACTTGGGTGGATCGCCATGTC 224 389 777 Antisense
TCGCCATGTCAATCAGAGCCTCAAA 301 599 792 Antisense
Sequence Source Affymetrix Proprietary Database