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[187236_at]

Description Y116F11B.13 /REP_DB=WormBase Gene ID /WP=CE25727 /TR=Q9NEJ5 /GB=CAB81982.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.8
(-3)
A 		4.5
(0.8)
A 		5.5
(3)
A 		5.4
(2.8)
A 		3
B 4.5
(-2.6)
A 		33.3
(3)
A 		13.2
(-0.9)
A 		2.2
(-3)
A 		31
C 13.2
(0.5)
A 		8.2
(-1.9)
A 		5.9
(-3)
A 		18.5
(3)
A 		13
avr 6.8
(-3) 		15.3
(3) 		8.2
(-2) 		8.7
(-1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.7
(-2.6)
A 		4
(-2.5)
A 		13.6
(0.3)
A 		2.2
(-3)
A 		3.2
(-2.7)
A 		23.1
(3)
A 		21
B 3.3
(-2.5)
A 		26.2
(3)
A 		8.1
(-1.3)
A 		5.5
(-1.9)
A 		16.4
(0.7)
A 		1
(-3)
A 		25
C 3.3
(-3)
A 		4.9
(-2.4)
A 		19.8
(3)
A 		3.2
(-3)
A 		4.8
(-2.4)
A 		4.3
(-2.6)
A 		17
avr 3.4
(-3) 		11.7
(1.8) 		13.8
(3) 		3.6
(-2.9) 		8.1
(-0.3) 		9.5
(0.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-1)
A 		1
(-1)
A 		1.4
(3)
A 		0.8
(-3)
A 		1
B 1.4
(-2.3)
A 		8.2
(3)
A 		3.1
(-1)
A 		0.5
(-3)
A 		8
C 4.4
(3)
A 		2.3
(-2.5)
A 		2.1
(-3)
A 		3.1
(-0.4)
A 		2
avr 2.3
(-0.9) 		3.8
(3) 		2.2
(-1.2) 		1.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		1.4
(-2)
A 		3
(-0.1)
A 		0.6
(-3)
A 		1
(-2.5)
A 		5.6
(3)
A 		5
B 1.1
(-2.5)
A 		8.7
(3)
A 		2
(-1.8)
A 		1.5
(-2.2)
A 		6.7
(1.6)
A 		0.4
(-3)
A 		8
C 1.2
(-2.2)
A 		1.5
(-1.8)
A 		5
(3)
A 		0.6
(-3)
A 		1.5
(-1.8)
A 		1.4
(-1.9)
A 		4
avr 1
(-2.8) 		3.9
(3) 		3.3
(1.8) 		0.9
(-3) 		3.1
(1.4) 		2.5
(0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12633
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.13 NCBI
Target Description Y116F11B.13 /REP_DB=WormBase Gene ID /WP=CE25727 /TR=Q9NEJ5 /GB=CAB81982.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075450 NCBI Caenorhabditis elegans Y116F11B.13 (Y116F11B.13) mRNA, complete cds. 11/11 None
GENEFINDER00000031770 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19881213:19884042:1 11/11 None
Y116F11B.13 ENSEMBL cdna:known chromosome:CEL140:V:19881213:19884042:1 gene:Y116F11B.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031767 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19881212-19884042(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116F11B.13
Entrez Gene 191024 Entrez gene
SwissProt Q9NEJ5 EMBL-EBI
WormBase CE25727 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB81982 Hypothetical protein Y116F11B.13 [Caenorhabditis elegans] ref|NP_507851.1| Y116F11B.13 [Caenorhabditis elegans] 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:187236_AT
ggaaccaacgaagacgtctcgtagcagaaaagttccgcattcctgatatgtggaaattgg
agtacaacaaaacactggaggacaaagcaaaaaatactggaggatatgattcagaacaag
gaaatcaatttatttccgattacaatgtttcgttttttgaagaatacgacgatgctcgtt
ttaagaaacagttcctgatgaaccacgataccgactctaagaaactgtacagtgttccaa
tggatccatttcgaagaactattggatgttatgaacgaaaaaatgagtactgggcagttg
gacgtaaaaacgaggcgacacggaactgtcaacgatacgaaaggagatcaagatgtgatg
gaggtcgtaatgaagatggcctgtgtgtcccaggactcttagtttcaaccacaattccac
caaaaactgtcaaaaatgaaacaattgaagaggaaaacgatgacaaagaggagaagcagg
aaaagaaaaattgggaagaggaatatgatttaattctgattttcaactcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACCAACGAAGACGTCTCGTAGC 683 527 122 Antisense
GTCTCGTAGCAGAAAAGTTCCGCAT 117 471 137 Antisense
AAAGTTCCGCATTCCTGATATGTGG 329 123 150 Antisense
GTTCCTGATGAACCACGATACCGAC 125 441 312 Antisense
GAACCACGATACCGACTCTAAGAAA 564 345 321 Antisense
AACTGTACAGTGTTCCAATGGATCC 181 141 344 Antisense
GAGGCGACACGGAACTGTCAACGAT 25 407 433 Antisense
AAGATGGCCTGTGTGTCCCAGGACT 491 153 494 Antisense
TGTCCCAGGACTCTTAGTTTCAACC 40 555 507 Antisense
TCTTAGTTTCAACCACAATTCCACC 536 615 518 Antisense
GATTTAATTCTGATTTTCAACTCGA 299 429 628 Antisense
Sequence Source Affymetrix Proprietary Database