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[187235_at]

Description B0244.4 /REP_DB=WormBase Gene ID /WP=CE01752 /TR=SW:Q09964 /GB=AAA68381.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 21.3
(-1.1)
A 		17
(-1.6)
A 		5.2
(-3)
A 		54.8
(3)
A 		50
B 53.6
(3)
A 		26
(-0.9)
A 		17.6
(-2.1)
A 		11.4
(-3)
A 		42
C 33.7
(3)
A 		13.1
(-1.7)
A 		28.9
(1.9)
A 		7.5
(-3)
A 		26
avr 36.2
(3) 		18.7
(-2.5) 		17.2
(-3) 		24.6
(-0.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 19.4
(0.1)
A 		32.1
(3)
A 		14.8
(-0.9)
A 		5.8
(-3)
A 		7.2
(-2.7)
A 		9.6
(-2.1)
A 		26
B 33.5
(3)
A 		31.6
(2.6)
A 		5.6
(-2.6)
A 		7.5
(-2.2)
A 		3.5
(-3)
A 		26.4
(1.6)
A 		30
C 4.1
(-3)
A 		24.2
(-0.1)
A 		46.4
(3)
A 		8.1
(-2.4)
A 		22.3
(-0.4)
A 		22.1
(-0.4)
A 		42
avr 19
(0.2) 		29.3
(3) 		22.3
(1.1) 		7.1
(-3) 		11
(-1.9) 		19.4
(0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.8
(2.8)
A 		3.7
(-0.9)
A 		1.4
(-3)
A 		8
(3)
A 		7
B 17.1
(3)
A 		6.4
(-1.4)
A 		4.1
(-2.3)
A 		2.4
(-3)
A 		15
C 11.1
(3)
A 		3.8
(-1.5)
A 		10.1
(2.4)
A 		1.3
(-3)
A 		10
avr 12
(3) 		4.6
(-2.5) 		5.2
(-2) 		3.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.6
(-1.7)
A 		11.4
(3)
A 		3.2
(-2)
A 		1.5
(-3)
A 		2.2
(-2.6)
A 		2.3
(-2.5)
A 		10
B 11.7
(3)
A 		10.5
(2.3)
A 		1.4
(-3)
A 		2
(-2.7)
A 		1.4
(-3)
A 		9.8
(1.9)
A 		10
C 1.5
(-3)
A 		7.4
(0.4)
A 		11.8
(3)
A 		1.6
(-2.9)
A 		7.2
(0.3)
A 		7.4
(0.4)
A 		10
avr 5.6
(-0.1) 		9.8
(3) 		5.5
(-0.2) 		1.7
(-3) 		3.6
(-1.6) 		6.5
(0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7974
Sequence Type Exemplar sequence
Representative Public ID B0244.4 NCBI
Target Description B0244.4 /REP_DB=WormBase Gene ID /WP=CE01752 /TR=SW:Q09964 /GB=AAA68381.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065842
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016002 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5743557:5751585:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065842 8/11 Cross Hyb Matching Probes None
B0244.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5749724-5751584(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68379 Hypothetical protein B0244.6 [Caenorhabditis elegans] ref|NP_498241.1| B0244.6 [Caenorhabditis elegans] sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0244.6 1.0E-147
blast NP_498242 B0244.5 [Caenorhabditis elegans] sp|Q10909|YS95_CAEEL Hypothetical protein B0244.5 in chromosome III 1.0E-113
blast AAA68380 Hypothetical protein B0244.5 [Caenorhabditis elegans] 1.0E-112
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016002 15 20-42,62-84,97-119,134-165,187-209,288-310,330-352,372-391,404-426,449-471,500-522,553-570,591-613,776-798,827-849
Sequence
Target Sequence 
>C. ELEGANS:187235_AT
atgtttcaagctgctgatctatcagatggaccatttcaatgtgatttaaaacattgtcaa
ccaataaccaatatgataatgtgtaagactactttatttttagtttctgagaaaataaaa
aaaatcattttagtagtactaattttgacgtcatttctcatcccaattgtcacattatca
tttgttttggtgactttatgtttctacaaaaatcgatccgaaagtattggagactttaca
accgataactctgtatctaaatcagcccggacccgtcttgcatggacactattcactttt
acattgattactctaactgaagcaattccttcgttttatcttgttggtacaagtattgac
agttcaatgataatatgctcaaatttctataaagccgatcatttaattgtaccatttaca
atgaattcattgaaaacccttgcttgggcaattgctctcaacgtggatcctttgtgctca
ttgttattcgatcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTCAAGCTGCTGATCTATCAG 337 45 13 Antisense
AATTTTGACGTCATTTCTCATCCCA 331 175 153 Antisense
GTTTTGGTGACTTTATGTTTCTACA 241 447 196 Antisense
GAGACTTTACAACCGATAACTCTGT 589 393 242 Antisense
TCTGTATCTAAATCAGCCCGGACCC 26 605 262 Antisense
GCAATTCCTTCGTTTTATCTTGTTG 496 323 334 Antisense
AAGCCGATCATTTAATTGTACCATT 608 149 404 Antisense
GAATTCATTGAAAACCCTTGCTTGG 127 323 435 Antisense
GCTTGGGCAATTGCTCTCAACGTGG 94 307 454 Antisense
TCAACGTGGATCCTTTGTGCTCATT 444 631 470 Antisense
TTGTGCTCATTGTTATTCGATCCCC 412 709 484 Antisense
Sequence Source Affymetrix Proprietary Database