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[187234_s_at]

Description Y110A2AL.9 /REP_DB=WormBase Gene ID /WP=CE23219 /TR=Q9N499 /GB=AAF60397.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 75      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 96      6grp_total > 76      4grp_total > 01      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 760
1 2 3 4 range
A 245
(-2.4)
P 		175.9
(-3)
P 		199
(-2.8)
P 		884.8
(3)
P 		709
B 257.1
(-1.8)
P 		124.8
(-3)
P 		283
(-1.5)
P 		779.4
(3)
P 		655
C 269.2
(-2.4)
P 		215.4
(-3)
P 		235.8
(-2.8)
P 		795.1
(3)
P 		580
avr 257.1
(-2.2) 		172
(-3) 		239.3
(-2.4) 		819.8
(3) 		648

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1249
1 2 3 4 5 6 range
A 556.9
(-3)
P 		736
(-1.9)
P 		766.3
(-1.8)
P 		1274.1
(1.3)
P 		615.8
(-2.6)
P 		1565.3
(3)
P 		1008
B 316.2
(-3)
P 		506.9
(-1.9)
P 		627.3
(-1.1)
P 		811.5
(-0)
P 		778.5
(-0.2)
P 		1312.5
(3)
P 		996
C 449.8
(-3)
P 		490.3
(-2.8)
P 		1120
(0.7)
P 		792.8
(-1.1)
P 		856.9
(-0.7)
P 		1533.7
(3)
P 		1084
avr 441
(-3) 		577.7
(-2.2) 		837.9
(-0.7) 		959.5
(0) 		750.4
(-1.2) 		1470.5
(3) 		1030
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 89.2
(0.4)
P 		38.2
(-3)
P 		52
(-2.1)
P 		129.5
(3)
P 		91
B 82
(-0.7)
P 		30.8
(-3)
P 		65.6
(-1.5)
P 		166.1
(3)
P 		135
C 89.1
(-0.7)
P 		61.9
(-3)
P 		82.2
(-1.3)
P 		134.1
(3)
P 		72
avr 86.8
(-0.4) 		43.6
(-3) 		66.6
(-1.6) 		143.2
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 102.7
(-3)
P 		261.7
(0.4)
P 		166.9
(-1.6)
P 		323.2
(1.8)
P 		185.8
(-1.2)
P 		381.1
(3)
P 		278
B 110
(-3)
P 		168.7
(-2.1)
P 		152.3
(-2.3)
P 		214.9
(-1.3)
P 		316.3
(0.3)
P 		489.4
(3)
P 		379
C 166.7
(-2.7)
P 		149.6
(-3)
P 		285.1
(-0.8)
P 		159.4
(-2.8)
P 		277.3
(-0.9)
P 		513.4
(3)
P 		364
avr 126.5
(-3) 		193.3
(-1.8) 		201.4
(-1.7) 		232.5
(-1.1) 		259.8
(-0.6) 		461.3
(3) 		335
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187234_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5228
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.9 NCBI
Target Description Y110A2AL.9 /REP_DB=WormBase Gene ID /WP=CE23219 /TR=Q9N499 /GB=AAF60397.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061985 NCBI Caenorhabditis elegans Y110A2AL.9 (Y110A2AL.9) mRNA, complete cds. 11/11 None
SNAP00000036286 ENSEMBL cdna:SNAP chromosome:CEL140:II:2866015:2866427:-1 11/11 None
GENEFINDER00000036301 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2866015:2866864:-1 11/11 None
Y110A2AL.9 ENSEMBL cdna:known chromosome:CEL140:II:2866015:2866427:-1 gene:Y110A2AL.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2866013-2866426(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.9
Entrez Gene 173632 Entrez gene
SwissProt Q9N499 EMBL-EBI
WormBase CE23219 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60397 Hypothetical protein Y110A2AL.9 [Caenorhabditis elegans] ref|NP_494386.1| Y110A2AL.9 [Caenorhabditis elegans] 8.0E-59
blast AAF60397 Hypothetical protein Y110A2AL.9 [Caenorhabditis elegans] ref|NP_494386.1| Y110A2AL.9 [Caenorhabditis elegans] 9.0E-59
blast AAF60400 Hypothetical protein Y110A2AL.2 [Caenorhabditis elegans] ref|NP_494388.2| Y110A2AL.2 [Caenorhabditis elegans] 2.0E-23
blast AAF60400 Hypothetical protein Y110A2AL.2 [Caenorhabditis elegans] ref|NP_494388.2| Y110A2AL.2 [Caenorhabditis elegans] 3.0E-19
blast AAF60402 Hypothetical protein Y110A2AL.3 [Caenorhabditis elegans] ref|NP_494387.1| Y110A2AL.3 [Caenorhabditis elegans] 5.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 0.0068
Pfam IPR007026 EMBL-EBI CC domain 4.5E-18
Pfam IPR007026 EMBL-EBI CC domain 0.0013
Pfam IPR007026 EMBL-EBI CC domain 8.3E-5
Pfam IPR007026 EMBL-EBI CC domain 4.5E-18
Pfam IPR007026 EMBL-EBI CC domain 0.0013
Sequence
Target Sequence 
>C. ELEGANS:187234_S_AT
gctgtgagagcaagaatgttgcggtaagctccctgttgtcttgtaaaagcgatatgacac
ccgctgggtacgggctctgccgtccgggctacacattgatgtacggctaccggtgctgcg
cgaccaaggatgtttttgaccccaccactgctacttgttataccggatatggatactcga
attctgtaatgggttctgctgtcaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTGAGAGCAAGAATGTTGCGGT 242 295 47 Antisense
AAAAGCGATATGACACCCGCTGGGT 559 129 91 Antisense
ATATGACACCCGCTGGGTACGGGCT 685 15 98 Antisense
TACACATTGATGTACGGCTACCGGT 534 641 136 Antisense
ATTGATGTACGGCTACCGGTGCTGC 7 5 141 Antisense
GTGCTGCGCGACCAAGGATGTTTTT 81 479 159 Antisense
TACTTGTTATACCGGATATGGATAC 32 645 198 Antisense
ACCGGATATGGATACTCGAATTCTG 169 87 208 Antisense
GATACTCGAATTCTGTAATGGGTTC 33 423 218 Antisense
AATTCTGTAATGGGTTCTGCTGTCA 63 175 226 Antisense
CTGTAATGGGTTCTGCTGTCAATGG 534 239 230 Antisense
Sequence Source Affymetrix Proprietary Database