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[187232_at]

Description C02B8.1 /REP_DB=WormBase Gene ID /WP=CE03890 /TR=SW:Q11091 /GB=AAA81443.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 6.5
(-2.8)
A 		2.6
(-3)
A 		4.6
(-2.9)
A 		137.6
(3)
A 		135
B 36.7
(3)
A 		12.2
(-1.6)
A 		4.7
(-3)
A 		5.7
(-2.8)
A 		32
C 41.1
(-0.6)
A 		2.5
(-3)
A 		17.2
(-2.1)
A 		97.7
(3)
A 		95
avr 28.1
(-1.2) 		5.8
(-3) 		8.8
(-2.8) 		80.3
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 5.5
(-2.3)
A 		2.3
(-3)
A 		29
(2.9)
A 		29.6
(3)
A 		3.1
(-2.8)
A 		4.4
(-2.5)
A 		27
B 4.5
(-2.6)
A 		1.7
(-3)
A 		41.5
(3)
A 		16.5
(-0.8)
A 		13.9
(-1.2)
A 		32.6
(1.7)
A 		40
C 3.8
(-3)
A 		8.1
(-2)
A 		29.5
(3)
A 		6.3
(-2.4)
A 		7.1
(-2.2)
A 		26.1
(2.2)
A 		26
avr 4.6
(-2.9) 		4
(-3) 		33.3
(3) 		17.5
(-0.2) 		8
(-2.2) 		21
(0.5) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.4
(-2.4)
A 		0.6
(-3)
A 		1.2
(-2.8)
A 		20.1
(3)
A 		20
B 11.7
(3)
A 		3
(-1.9)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		11
C 13.6
(1.9)
A 		0.7
(-3)
A 		6
(-1)
A 		16.5
(3)
A 		16
avr 9.2
(1.2) 		1.4
(-3) 		2.8
(-2.3) 		12.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1
(-2.8)
A 		0.8
(-3)
A 		6.3
(1.9)
A 		7.5
(3)
A 		0.9
(-2.9)
A 		1.1
(-2.7)
A 		7
B 1.6
(-2.5)
A 		0.6
(-3)
A 		10.1
(1.9)
A 		4.4
(-1)
A 		5.6
(-0.4)
A 		12.2
(3)
A 		12
C 1.4
(-2.9)
A 		2.5
(-2)
A 		7.5
(2)
A 		1.3
(-3)
A 		2.3
(-2.2)
A 		8.7
(3)
A 		7
avr 1.3
(-3) 		1.3
(-3) 		8
(3) 		4.4
(-0.2) 		2.9
(-1.6) 		7.3
(2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16512
Sequence Type Exemplar sequence
Representative Public ID C02B8.1 NCBI
Target Description C02B8.1 /REP_DB=WormBase Gene ID /WP=CE03890 /TR=SW:Q11091 /GB=AAA81443.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076972 NCBI Caenorhabditis elegans C02B8.1 (C02B8.1) mRNA, complete cds. 11/11 None
SNAP00000001643 ENSEMBL cdna:SNAP chromosome:CEL140:X:8147674:8148110:1 11/11 None
C02B8.1.1 ENSEMBL cdna:known chromosome:CEL140:X:8147650:8148528:1 gene:C02B8.1 11/11 None
C02B8.1.2 ENSEMBL cdna:known chromosome:CEL140:X:8147674:8148410:1 gene:C02B8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8147672-8148435(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B8.1
Entrez Gene 181072 Entrez gene
SwissProt Q11091 EMBL-EBI
WormBase CE33514 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81443 Hypothetical protein C02B8.1 [Caenorhabditis elegans] ref|NP_509373.2| C02B8.1 [Caenorhabditis elegans] sp|Q11091|YWZ1_CAEEL Hypothetical protein C02B8.1 in chromosome X 1.0E-57
blast CAA82372 Hypothetical protein ZK507.6 [Caenorhabditis elegans] ref|NP_499018.1| ZK507.6 [Caenorhabditis elegans] sp|P34638|CCNA1_CAEEL G2/mitotic-specific cyclin A1 gb|AAA84393.1| cyclin A 4.0E-29
Sequence
Target Sequence 
>C. ELEGANS:187232_AT
gagagaagtaccggcagtgctacaaaatggcttcgcgaagaagaaaagattgaaaaaaaa
agtcgtgcagatcaactcaagatcaagttcatgcagactcgagacaacagtgatatcaac
tcaatattctcagagccaccttcagaattctccgtgttatgcgacgacgacgattgtgat
aaaggctccgttgtctcttcgacattgaccacaagcatacgcaaaaccttctcatccttc
cgctttgatgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAAGTACCGGCAGTGCTACAA 540 393 34 Antisense
GTGCTACAAAATGGCTTCGCGAAGA 703 479 50 Antisense
AAAGTCGTGCAGATCAACTCAAGAT 204 121 92 Antisense
ACAGTGATATCAACTCAATATTCTC 683 107 140 Antisense
CAATATTCTCAGAGCCACCTTCAGA 432 179 155 Antisense
GAATTCTCCGTGTTATGCGACGACG 22 325 178 Antisense
GTTATGCGACGACGACGATTGTGAT 194 447 189 Antisense
GTGATAAAGGCTCCGTTGTCTCTTC 315 483 209 Antisense
GTCTCTTCGACATTGACCACAAGCA 688 469 226 Antisense
AAGCATACGCAAAACCTTCTCATCC 556 151 246 Antisense
TTCTCATCCTTCCGCTTTGATGAAA 677 691 262 Antisense
Sequence Source Affymetrix Proprietary Database