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[187229_s_at]

Description Y54E10A.12 /REP_DB=WormBase Gene ID /WP=CE24441 /TR=Q9N3E8 /GB=AAF60766.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 2.6
(-3)
A 		10.5
(-0.7)
A 		23.3
(3)
A 		23.3
(3)
A 		21
B 6.2
(-3)
A 		49
(1.7)
A 		61.4
(3)
A 		49.4
(1.7)
A 		55
C 15.6
(-1.7)
A 		5.5
(-3)
A 		24.5
(-0.5)
A 		50.5
(3)
A 		45
avr 8.1
(-3) 		21.7
(-0.5) 		36.4
(2.1) 		41.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 7.5
(-2.9)
A 		5.6
(-3)
A 		65.3
(-1.2)
A 		67.5
(-1.1)
A 		114.1
(0.3)
P 		200.4
(3)
P 		195
B 3.6
(-3)
A 		3.7
(-3)
A 		61.9
(-1.5)
A 		62.9
(-1.5)
M 		145.2
(0.5)
P 		244.2
(3)
P 		241
C 2.3
(-3)
A 		6.7
(-2.9)
A 		50.3
(-1.7)
A 		101.8
(-0.2)
M 		99.6
(-0.3)
A 		216.2
(3)
P 		214
avr 4.5
(-3) 		5.3
(-3) 		59.2
(-1.5) 		77.4
(-1) 		119.6
(0.2) 		220.3
(3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.9
(-3)
A 		2.3
(-1.4)
A 		6.1
(3)
A 		3.4
(-0.1)
A 		5
B 2
(-3)
A 		12.1
(2)
A 		14.2
(3)
A 		10.5
(1.2)
A 		12
C 5.2
(0.1)
A 		1.6
(-3)
A 		8.5
(3)
A 		8.5
(3)
A 		7
avr 2.7
(-3) 		5.3
(-0.7) 		9.6
(3) 		7.5
(1.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 1.4
(-3)
A 		2
(-2.9)
A 		14.2
(-1.4)
A 		17.1
(-1)
A 		34.4
(1.2)
P 		48.8
(3)
P 		47
B 1.3
(-3)
A 		1.2
(-3)
A 		15
(-2.1)
A 		16.7
(-2)
M 		59
(0.9)
P 		91.1
(3)
P 		90
C 0.9
(-3)
A 		2.1
(-2.9)
A 		12.8
(-2)
A 		20.5
(-1.4)
M 		32.2
(-0.4)
A 		72.4
(3)
P 		72
avr 1.2
(-3) 		1.8
(-2.9) 		14
(-1.9) 		18.1
(-1.5) 		41.9
(0.5) 		70.8
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187229_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.52
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.12 NCBI
Target Description Y54E10A.12 /REP_DB=WormBase Gene ID /WP=CE24441 /TR=Q9N3E8 /GB=AAF60766.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058719(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058719 NCBI Caenorhabditis elegans Y54E10A.12 (Y54E10A.12) mRNA, complete cds. 11/11 None
SNAP00000033830 ENSEMBL cdna:SNAP chromosome:CEL140:I:3193660:3198404:-1 11/11 None
GENEFINDER00000033851 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3193660:3203230:-1 11/11 None
Y54E10A.12 ENSEMBL cdna:known chromosome:CEL140:I:3193599:3198832:-1 gene:Y54E10A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3193659-3198832(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10A.12
Entrez Gene 171894 Entrez gene
SwissProt Q9N3E8 EMBL-EBI
WormBase CE24441 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60766 Hypothetical protein Y54E10A.12 [Caenorhabditis elegans] ref|NP_491120.1| Y54E10A.12 [Caenorhabditis elegans] 0.0
blast AAF60767 Hypothetical protein Y54E10A.13 [Caenorhabditis elegans] ref|NP_491121.1| Y54E10A.13 [Caenorhabditis elegans] 6.0E-50
blast AAB96721 Hypothetical protein F57B10.4 [Caenorhabditis elegans] ref|NP_491895.1| F57B10.4 [Caenorhabditis elegans] 5.0E-44
blast AAB96721 Hypothetical protein F57B10.4 [Caenorhabditis elegans] ref|NP_491895.1| F57B10.4 [Caenorhabditis elegans] 2.0E-40
blast NP_491111 K09H9.1 [Caenorhabditis elegans] gb|AAB97574.2| Hypothetical protein K09H9.1 [Caenorhabditis elegans] 7.0E-35
Sequence
Target Sequence 
>C. ELEGANS:187229_S_AT
gattatctgcgtccaagaaactcgagaaaggaatcagttttccgcaaacttccaataccg
gagcgctcgatgcaacacgattcggatacactggataccaggaaaaactcgaaaaccatg
ttgaaaaatgaatcgacccgccactcaaatccaggaattcgacttctgaaagttccgaac
agagattcagacgaagaatcggagaactcattcgacgacggaaccactcaggatgaatct
ggagttaacgcgtttttcggacaattatctgatgagaaagaggaatctccgacggctgtc
gagttctcaatggctgcacatttgacagaatttagtcaacgacaggcggctgctgcggcc
aagatgaacatgaaaacaccggagaagaaggttgtggagattgaaagtgacgaggatgat
gatctcgacagcagtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCTGCGTCCAAGAAACTCGA 492 429 1105 Antisense
TTCCAATACCGGAGCGCTCGATGCA 546 691 1154 Antisense
AGCGCTCGATGCAACACGATTCGGA 563 81 1166 Antisense
TGAAAAATGAATCGACCCGCCACTC 418 571 1226 Antisense
ATTCGACGACGGAACCACTCAGGAT 381 1 1314 Antisense
AACGCGTTTTTCGGACAATTATCTG 490 143 1351 Antisense
GGAATCTCCGACGGCTGTCGAGTTC 342 533 1386 Antisense
TGTCGAGTTCTCAATGGCTGCACAT 452 557 1401 Antisense
TTAGTCAACGACAGGCGGCTGCTGC 398 679 1436 Antisense
GCTGCTGCGGCCAAGATGAACATGA 542 297 1453 Antisense
GGATGATGATCTCGACAGCAGTATT 367 513 1518 Antisense
Sequence Source Affymetrix Proprietary Database