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[187228_at]

Description R07G3.6 /REP_DB=WormBase Gene ID /WP=CE02025 /TR=SW:Q09423 /GB=AAK31546.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 629
1 2 3 4 range
A 14.1
(-3)
A 		559.8
(2.4)
P 		621.6
(3)
P 		65.5
(-2.5)
A 		608
B 3.8
(-3)
A 		403.4
(2.6)
P 		435.8
(3)
P 		15.2
(-2.8)
A 		432
C 12
(-3)
A 		418.5
(0.9)
P 		632.5
(3)
P 		9.5
(-3)
A 		623
avr 10
(-3) 		460.6
(1.9) 		563.3
(3) 		30.1
(-2.8) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 141.9
(-2.9)
A 		315.5
(0.8)
P 		277.2
(0)
P 		414.8
(3)
P 		244.6
(-0.7)
P 		138
(-3)
A 		277
B 42.4
(-3)
A 		332.4
(2)
P 		168.8
(-0.8)
P 		393.8
(3)
P 		292.1
(1.3)
P 		110.4
(-1.8)
P 		351
C 29.5
(-3)
A 		366.7
(1.8)
P 		449.6
(3)
P 		331.2
(1.3)
P 		312
(1)
P 		77.8
(-2.3)
A 		420
avr 71.3
(-3) 		338.2
(2.2) 		298.5
(1.4) 		379.9
(3) 		282.9
(1.1) 		108.7
(-2.3) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 5.1
(-3)
A 		121.5
(1.4)
P 		162.5
(3)
P 		9.6
(-2.8)
A 		157
B 1.2
(-3)
A 		99.6
(2.9)
P 		101
(3)
P 		3.2
(-2.9)
A 		100
C 4
(-2.9)
A 		120.3
(0.3)
P 		220.5
(3)
P 		1.6
(-3)
A 		219
avr 3.4
(-3) 		113.8
(1.2) 		161.3
(3) 		4.8
(-2.9) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 26.2
(-3)
A 		112.2
(3)
P 		60.4
(-0.6)
P 		105.2
(2.5)
P 		73.8
(0.3)
P 		33.6
(-2.5)
A 		86
B 14.7
(-3)
A 		110.6
(2.5)
P 		41
(-1.5)
P 		104.3
(2.2)
P 		118.7
(3)
P 		41.2
(-1.5)
P 		104
C 10.9
(-3)
A 		111.9
(2.9)
P 		114.4
(3)
P 		66.6
(0.2)
P 		101
(2.2)
P 		26.1
(-2.1)
A 		104
avr 17.3
(-3) 		111.6
(3) 		71.9
(0.5) 		92
(1.8) 		97.8
(2.1) 		33.6
(-2) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4776
Sequence Type Exemplar sequence
Representative Public ID R07G3.6 NCBI
Target Description R07G3.6 /REP_DB=WormBase Gene ID /WP=CE02025 /TR=SW:Q09423 /GB=AAK31546.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063194 NCBI Caenorhabditis elegans R07G3.6 (R07G3.6) mRNA, complete cds. 11/11 None
SNAP00000041805 ENSEMBL cdna:SNAP chromosome:CEL140:II:7604192:7605358:-1 11/11 None
GENEFINDER00000041812 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7604192:7605150:-1 11/11 None
R07G3.6 ENSEMBL cdna:known chromosome:CEL140:II:7604125:7605237:-1 gene:R07G3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7604188-7605147(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07G3.6
Entrez Gene 187684 Entrez gene
SwissProt Q09423 EMBL-EBI
WormBase CE02025 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31546 Hypothetical protein R07G3.6 [Caenorhabditis elegans] ref|NP_495595.1| R07G3.6 [Caenorhabditis elegans] sp|Q09423|YRO6_CAEEL Hypothetical protein R07G3.6 in chromosome II 1.0E-160
blast CAE67498 Hypothetical protein CBG13008 [Caenorhabditis briggsae] 1.0E-151
blast AAK31546 Hypothetical protein R07G3.6 [Caenorhabditis elegans] ref|NP_495595.1| R07G3.6 [Caenorhabditis elegans] sp|Q09423|YRO6_CAEEL Hypothetical protein R07G3.6 in chromosome II 1.0E-144
blast CAE67498 Hypothetical protein CBG13008 [Caenorhabditis briggsae] 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:187228_AT
ccaccactgattgagcggctgtttaaaccctatattgaaccgtggcaaaaacaattggac
gatttttcaaaagatatggctggaatcactttaattcctacaacaactacgacgcctgct
cctacaactacaacaacaccgaacttcctagaaaaatcgttatcaatgttcttcccatca
ttgcgccgtaaacctcaatctattccaacacttccaccaacaactactccaactcctcga
cttttcgatccggaaatgtttgatcgcttatttttcaaacgtgataagagacaagctact
attgctcctgctccgaagttcgatatatttacagtcccacctccgccaccactatttcag
gaatgggaaaaaccaattctttctctgtccaatcctttcacactcaatccgctgatgaaa
atgttcactacaccatctcctccacaaacacttgctccacttcctaagattccagaacca
aacccatacgaaattaaaaaaggattgccagaaccgcaattcaagctccaggatccattc
tacaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCACTGATTGAGCGGCTGTTTA 530 273 307 Antisense
TCGTTATCAATGTTCTTCCCATCAT 120 605 463 Antisense
AAACCTCAATCTATTCCAACACTTC 555 125 496 Antisense
AGACAAGCTACTATTGCTCCTGCTC 176 73 595 Antisense
CTCCGCCACCACTATTTCAGGAATG 54 235 647 Antisense
GAAAAACCAATTCTTTCTCTGTCCA 518 353 673 Antisense
CTTTCACACTCAATCCGCTGATGAA 31 223 701 Antisense
GAAAATGTTCACTACACCATCTCCT 67 355 723 Antisense
TGCTCCACTTCCTAAGATTCCAGAA 516 581 759 Antisense
TGCCAGAACCGCAATTCAAGCTCCA 516 585 812 Antisense
AAGCTCCAGGATCCATTCTACAATC 254 151 829 Antisense
Sequence Source Affymetrix Proprietary Database