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[187225_s_at]

Description F02A9.1A /REP_DB=WormBase Gene ID /WP=CE00131 /TR=SW:P34380 /GB=CAA79614.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      6grp_total > 48      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 120.2
(-1.2)
A 		88.2
(-2.4)
A 		71.7
(-3)
A 		229.3
(3)
P 		158
B 133.5
(-1.6)
P 		43.4
(-3)
A 		59
(-2.8)
A 		422.6
(3)
P 		379
C 117
(-2.1)
M 		93.1
(-2.5)
A 		60.9
(-3)
A 		432.3
(3)
P 		371
avr 123.6
(-1.8) 		74.9
(-2.8) 		63.9
(-3) 		361.4
(3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 157
(0)
P 		160.7
(0.3)
P 		119.5
(-2.8)
P 		117.2
(-3)
M 		155.3
(-0.1)
P 		196.2
(3)
P 		79
B 135.6
(-1.1)
P 		160.3
(2.7)
P 		145.4
(0.4)
P 		161.2
(2.9)
P 		162
(3)
P 		123.4
(-3)
P 		39
C 179.5
(3)
P 		140.7
(-2.3)
M 		168.1
(1.5)
A 		174.2
(2.3)
A 		135.2
(-3)
P 		178.1
(2.8)
P 		44
avr 157.4
(0.6) 		153.9
(-0.3) 		144.3
(-3) 		150.9
(-1.2) 		150.8
(-1.2) 		165.9
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 43.8
(3)
A 		19.1
(-2.9)
A 		18.8
(-3)
A 		33.6
(0.6)
P 		25
B 42.6
(-0.6)
P 		10.7
(-3)
A 		13.7
(-2.8)
A 		90.1
(3)
P 		79
C 38.7
(-1)
M 		26.8
(-2.4)
A 		21.2
(-3)
A 		72.9
(3)
P 		52
avr 41.7
(0) 		18.9
(-2.9) 		17.9
(-3) 		65.5
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 28.9
(-2.4)
P 		57.2
(3)
P 		26
(-3)
P 		29.7
(-2.3)
M 		46.9
(1)
P 		47.8
(1.2)
P 		31
B 47.2
(-0.7)
P 		53.3
(0.5)
P 		35.3
(-3)
P 		42.7
(-1.5)
P 		65.8
(3)
P 		46
(-0.9)
P 		31
C 66.5
(3)
P 		42.9
(-1.5)
M 		42.8
(-1.5)
A 		35
(-3)
A 		43.7
(-1.3)
P 		59.6
(1.7)
P 		32
avr 47.5
(1.4) 		51.1
(2.7) 		34.7
(-3) 		35.8
(-2.6) 		52.1
(3) 		51.1
(2.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187225_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6084
Sequence Type Exemplar sequence
Representative Public ID F02A9.1A NCBI
Target Description F02A9.1A /REP_DB=WormBase Gene ID /WP=CE00131 /TR=SW:P34380 /GB=CAA79614.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026071 NCBI Caenorhabditis elegans F02A9.1 (F02A9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000002188 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9075866:9077705:-1 11/11 None
F02A9.1b ENSEMBL cdna:known chromosome:CEL140:III:9074861:9077705:-1 gene:F02A9.1 11/11 A 
F02A9.1a ENSEMBL cdna:known chromosome:CEL140:III:9075866:9077705:-1 gene:F02A9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002182 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9075861-9077701(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02A9.1
Entrez Gene 184071 Entrez gene
SwissProt P34380 EMBL-EBI
WormBase CE00131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P34381 Hypothetical protein F02A9.1b in chromosome III 0.0
blast CAA79614 Hypothetical protein F02A9.1 [Caenorhabditis elegans] ref|NP_001021242.1| F02A9.1 [Caenorhabditis elegans] sp|P34380|YLPA_CAEEL Hypothetical protein F02A9.1a in chromosome III 1.0E-112
blast CAJ15163 Hypothetical protein F02A9.7 [Caenorhabditis elegans] ref|NP_001021243.1| F02A9.7 [Caenorhabditis elegans] 1.0E-100
blast P34381 Hypothetical protein F02A9.1b in chromosome III 1.0E-72
blast CAA79614 Hypothetical protein F02A9.1 [Caenorhabditis elegans] ref|NP_001021242.1| F02A9.1 [Caenorhabditis elegans] sp|P34380|YLPA_CAEEL Hypothetical protein F02A9.1a in chromosome III 3.0E-72
blast CAE62673 Hypothetical protein CBG06814 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021242.1 2 4-21,150-172
F02A9.1b 2 137-159,264-286
F02A9.1a 2 4-21,150-172
GENEFINDER00000002188 2 4-21,150-172
Sequence
Target Sequence 
>C. ELEGANS:187225_S_AT
tgtttcactcattatttgctctaagttttgttagtttggtagcatcaataaataatcaaa
actcgagatatgataaaatgtttttggcaatggtttgtcaagatcaaaacggttgcgaag
taaatatacgttttctgaaacagtcatttcctgattcaaactctacggaaccattatatg
aacatacaatgatatacaataatggaagtcttgatgaaataacaattgatgttacggaag
atgtgaatatcatcgaattcacatttacagcgcccgatgaaaatggaacaactattgtag
aaaccgattcgtgggaattgaacttttccgagacctatttccacactatcggatcccttc
aacttgtcggaaatttgccatgtggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTCACTCATTATTTGCTCTAAG 318 561 23 Antisense
ATGTTTTTGGCAATGGTTTGTCAAG 574 45 100 Antisense
TACGTTTTCTGAAACAGTCATTTCC 540 647 149 Antisense
GTCATTTCCTGATTCAAACTCTACG 563 467 165 Antisense
CAAACTCTACGGAACCATTATATGA 62 191 179 Antisense
CATCGAATTCACATTTACAGCGCCC 198 211 273 Antisense
TTCACATTTACAGCGCCCGATGAAA 419 685 280 Antisense
TGAACTTTTCCGAGACCTATTTCCA 309 573 341 Antisense
ACCTATTTCCACACTATCGGATCCC 128 85 355 Antisense
CGGATCCCTTCAACTTGTCGGAAAT 648 243 372 Antisense
CTTGTCGGAAATTTGCCATGTGGCC 85 217 385 Antisense
Sequence Source Affymetrix Proprietary Database