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[187224_at]

Description F02A9.1A /REP_DB=WormBase Gene ID /WP=CE00131 /TR=SW:P34380 /GB=CAA79614.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 73      6grp_total > 85      4grp_total > 03      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1247
1 2 3 4 range
A 467.6
(-1.6)
P 		210.1
(-2.9)
P 		184.7
(-3)
P 		1431.8
(3)
P 		1247
B 414.3
(-1.9)
P 		272.2
(-2.6)
P 		201.6
(-3)
P 		1370.3
(3)
P 		1169
C 404.5
(-2)
P 		260.7
(-2.7)
P 		203.5
(-3)
P 		1385.7
(3)
P 		1182
avr 428.8
(-1.8) 		247.7
(-2.7) 		196.6
(-3) 		1395.9
(3) 		1199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 811.7
(3)
P 		496.1
(-3)
P 		549.2
(-2)
P 		533.9
(-2.3)
P 		695.4
(0.8)
P 		561.6
(-1.8)
P 		316
B 563.4
(-1.4)
P 		521.5
(-3)
P 		529
(-2.7)
P 		683.1
(3)
P 		528.1
(-2.8)
P 		638.6
(1.3)
P 		162
C 459.9
(-3)
P 		485.3
(-2.6)
P 		516.7
(-2)
P 		802.9
(3)
P 		552.9
(-1.4)
P 		712.7
(1.4)
P 		343
avr 611.7
(0.9) 		501
(-3) 		531.6
(-1.9) 		673.3
(3) 		592.1
(0.2) 		637.6
(1.8) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 170.2
(1.6)
P 		45.6
(-3)
P 		48.3
(-2.9)
P 		209.6
(3)
P 		164
B 132.1
(-0.9)
P 		67.2
(-2.5)
P 		46.7
(-3)
P 		292
(3)
P 		245
C 133.9
(-0.7)
P 		75
(-2.8)
P 		70.9
(-3)
P 		233.7
(3)
P 		163
avr 145.4
(-0.2) 		62.6
(-2.8) 		55.3
(-3) 		245.1
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 149.6
(-1)
P 		176.4
(0.8)
P 		119.6
(-3)
P 		135.4
(-1.9)
P 		209.8
(3)
P 		136.7
(-1.9)
P 		90
B 196.1
(0.7)
P 		173.6
(-0.5)
P 		128.5
(-3)
P 		180.9
(-0.1)
P 		214.6
(1.7)
P 		238.1
(3)
P 		110
C 170.5
(-0.8)
P 		148.1
(-2.1)
P 		131.5
(-3)
P 		161.5
(-1.3)
P 		178.9
(-0.3)
P 		238.6
(3)
P 		107
avr 172.1
(0.5) 		166
(0) 		126.5
(-3) 		159.3
(-0.5) 		201.1
(2.7) 		204.5
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6084
Sequence Type Exemplar sequence
Representative Public ID F02A9.1A NCBI
Target Description F02A9.1A /REP_DB=WormBase Gene ID /WP=CE00131 /TR=SW:P34380 /GB=CAA79614.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026071 NCBI Caenorhabditis elegans F02A9.1 (F02A9.1) mRNA, complete cds. 11/11 None
SNAP00000002182 ENSEMBL cdna:SNAP chromosome:CEL140:III:9075866:9076966:-1 11/11 None
GENEFINDER00000002188 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9075866:9077705:-1 11/11 None
F02A9.1a ENSEMBL cdna:known chromosome:CEL140:III:9075866:9077705:-1 gene:F02A9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9075861-9077701(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02A9.1
Entrez Gene 184071 Entrez gene
SwissProt P34380 EMBL-EBI
WormBase CE00131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79614 Hypothetical protein F02A9.1 [Caenorhabditis elegans] ref|NP_001021242.1| F02A9.1 [Caenorhabditis elegans] sp|P34380|YLPA_CAEEL Hypothetical protein F02A9.1a in chromosome III 1.0E-112
blast CAA79614 Hypothetical protein F02A9.1 [Caenorhabditis elegans] ref|NP_001021242.1| F02A9.1 [Caenorhabditis elegans] sp|P34380|YLPA_CAEEL Hypothetical protein F02A9.1a in chromosome III 3.0E-83
blast P34381 Hypothetical protein F02A9.1b in chromosome III 1.0E-72
blast CAE62673 Hypothetical protein CBG06814 [Caenorhabditis briggsae] 2.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021242.1 2 4-21,150-172
F02A9.1a 2 4-21,150-172
SNAP00000002182 1 116-138
GENEFINDER00000002188 2 4-21,150-172
Sequence
Target Sequence 
>C. ELEGANS:187224_AT
ttgccatgtggccgatacggttgcccgcaaactccactttgcaatggaagttgtcgtttc
atggtcattgtttcacttgcagctttttgtatttctgttttagctggactcgcgctacaa
actgtatacgtctcgtttctcgggtttcgaaaaactcgaaaagctgtcgaacttcgtgac
act

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCATGTGGCCGATACGGTTGCC 476 701 397 Antisense
GCCCGCAAACTCCACTTTGCAATGG 112 285 419 Antisense
ACTCCACTTTGCAATGGAAGTTGTC 222 97 427 Antisense
GGAAGTTGTCGTTTCATGGTCATTG 394 531 442 Antisense
ATGGTCATTGTTTCACTTGCAGCTT 564 49 457 Antisense
TTCACTTGCAGCTTTTTGTATTTCT 495 685 468 Antisense
GTATTTCTGTTTTAGCTGGACTCGC 277 453 485 Antisense
GTTTTAGCTGGACTCGCGCTACAAA 368 449 493 Antisense
GGACTCGCGCTACAAACTGTATACG 346 521 502 Antisense
AAACTGTATACGTCTCGTTTCTCGG 552 127 515 Antisense
AAAAGCTGTCGAACTTCGTGACACT 358 131 555 Antisense
Sequence Source Affymetrix Proprietary Database