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[187223_at]

Description R07G3.7 /REP_DB=WormBase Gene ID /WP=CE02026 /TR=SW:Q09424 /GB=AAK31547.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_highest_nonorm > 72      6grp_total > 81      4grp_total > 25      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 228.3
(-3)
P 		402.3
(1.7)
P 		314.4
(-0.7)
P 		449.5
(3)
P 		221
B 263.3
(-3)
P 		361.5
(0.3)
P 		326.8
(-0.9)
P 		440.6
(3)
P 		177
C 254.2
(-3)
P 		388.6
(1.8)
P 		336.7
(-0.1)
P 		423.7
(3)
P 		170
avr 248.6
(-3) 		384.1
(1.3) 		326
(-0.5) 		437.9
(3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 243.5
(-3)
P 		523.9
(2.3)
P 		394
(-0.2)
P 		561.6
(3)
P 		440
(0.7)
P 		464.8
(1.2)
P 		318
B 248.1
(-3)
P 		428.7
(1.1)
P 		338.6
(-0.9)
P 		509.4
(3)
P 		451.6
(1.7)
P 		407.7
(0.7)
P 		261
C 265
(-3)
P 		405.8
(-0.4)
P 		463.1
(0.7)
P 		584.8
(3)
P 		385.2
(-0.7)
P 		427.9
(0.1)
P 		320
avr 252.2
(-3) 		452.8
(1) 		398.6
(-0.1) 		551.9
(3) 		425.6
(0.5) 		433.5
(0.6) 		300
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 83.1
(1.8)
P 		87.3
(3)
P 		82.2
(1.6)
P 		65.8
(-3)
P 		22
B 84
(-0.3)
P 		89.3
(1.5)
P 		75.7
(-3)
P 		93.9
(3)
P 		18
C 84.1
(-1.3)
P 		111.7
(2.3)
P 		117.3
(3)
P 		71.4
(-3)
P 		46
avr 83.7
(-0.9) 		96.1
(3) 		91.7
(1.6) 		77
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 44.9
(-3)
P 		186.3
(3)
P 		85.8
(-1.3)
P 		142.4
(1.1)
P 		132.8
(0.7)
P 		113.2
(-0.1)
P 		141
B 86.3
(-2.8)
P 		142.7
(0.6)
P 		82.2
(-3)
P 		134.9
(0.1)
P 		183.5
(3)
P 		152
(1.1)
P 		101
C 98.2
(-3)
P 		123.8
(0.4)
P 		117.9
(-0.4)
P 		117.6
(-0.4)
P 		124.7
(0.5)
P 		143.3
(3)
P 		45
avr 76.5
(-3) 		150.9
(3) 		95.3
(-1.5) 		131.6
(1.4) 		147
(2.7) 		136.2
(1.8) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187223_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5150
Sequence Type Exemplar sequence
Representative Public ID R07G3.7 NCBI
Target Description R07G3.7 /REP_DB=WormBase Gene ID /WP=CE02026 /TR=SW:Q09424 /GB=AAK31547.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182175(11), NM_063196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182175 NCBI Caenorhabditis elegans R07G3.7b (R07G3.7) mRNA, complete cds. 11/11 None
NM_063196 NCBI Caenorhabditis elegans R07G3.7a (R07G3.7) mRNA, complete cds. 11/11 None
SNAP00000041807 ENSEMBL cdna:SNAP chromosome:CEL140:II:7611494:7613603:-1 11/11 None
GENEFINDER00000041819 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7611494:7613364:-1 9/11 None
R07G3.7b.3 ENSEMBL cdna:known chromosome:CEL140:II:7610917:7613654:-1 gene:R07G3.7 11/11 None
R07G3.7b.2 ENSEMBL cdna:known chromosome:CEL140:II:7610917:7613221:-1 gene:R07G3.7 11/11 None
R07G3.7b.1 ENSEMBL cdna:known chromosome:CEL140:II:7610917:7613652:-1 gene:R07G3.7 11/11 None
R07G3.7a ENSEMBL cdna:known chromosome:CEL140:II:7611494:7613603:-1 gene:R07G3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7611490-7613600(-) 100.0 100.0
Public Domain and Genome References
Ensembl R07G3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR12972 Hypothetical protein R07G3.7a [Caenorhabditis elegans] ref|NP_495597.2| R07G3.7a [Caenorhabditis elegans] sp|Q09424|YRO7_CAEEL Hypothetical protein R07G3.7 in chromosome II 0.0
blast AAR12972 Hypothetical protein R07G3.7a [Caenorhabditis elegans] ref|NP_495597.2| R07G3.7a [Caenorhabditis elegans] sp|Q09424|YRO7_CAEEL Hypothetical protein R07G3.7 in chromosome II 1.0E-168
blast AAR12973 Hypothetical protein R07G3.7b [Caenorhabditis elegans] ref|NP_871975.2| R07G3.7b [Caenorhabditis elegans] 1.0E-138
blast AAR12972 Hypothetical protein R07G3.7a [Caenorhabditis elegans] ref|NP_495597.2| R07G3.7a [Caenorhabditis elegans] sp|Q09424|YRO7_CAEEL Hypothetical protein R07G3.7 in chromosome II 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:187223_AT
gttttagttccatcaagtcagccacctcgtccaaaagtgactttgaaatcttctgaatgt
ctcggtcacaatgatgctggagtgttctgtttcaattgtaaaggatcttttgacagctac
aatcagtttcagctacacctcaatgaagattataacgatgggaaatgcaacagagcactt
ccggaatattattatgtacagtatatcagaattttttgttttaaaaaacattataaaaaa
atacggcttcgccagtccacgaagaaaaatcgaaaaagaatatctacagccctggagaag
ggtactagacacgatagaactcacatgttcgataaaagatacaaacacagtgtacagcat
cacaagccaatcaagagagatatcagtcatattcaatgtacactgtgtaaagccgtcaac
tttgcgtcaacaggagatctttatgcacatatggttaaatgtgcatcgtctacaactaat
gaagacaaagaatctgcaattgattgtccaacagcatttggttatggaatgcctccttca
tttaatgcatgtcagtatgtattccctgatccagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTAGTTCCATCAAGTCAGCCAC 356 449 589 Antisense
TCAGCCACCTCGTCCAAAAGTGACT 155 625 606 Antisense
GAAATCTTCTGAATGTCTCGGTCAC 281 363 633 Antisense
GATGCTGGAGTGTTCTGTTTCAATT 645 413 661 Antisense
TCAGTTTCAGCTACACCTCAATGAA 576 623 711 Antisense
GCAACAGAGCACTTCCGGAATATTA 304 319 755 Antisense
CAGTGTACAGCATCACAAGCCAATC 49 209 936 Antisense
GTAAAGCCGTCAACTTTGCGTCAAC 471 461 995 Antisense
GCGTCAACAGGAGATCTTTATGCAC 209 291 1012 Antisense
GGTTATGGAATGCCTCCTTCATTTA 204 507 1108 Antisense
CAGTATGTATTCCCTGATCCAGCAA 534 207 1141 Antisense
Sequence Source Affymetrix Proprietary Database