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[187222_at]

Description D1044.1 /REP_DB=WormBase Gene ID /WP=CE01204 /TR=SW:P41949 /GB=AAA50733.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 93      4grp_highest_8_8 > 24      4grp_high_8_8 > 44      6grp_total > 95      4grp_total > 52      6grp_high1_sub > 04      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 309.6
(1.2)
P 		372.1
(3)
P 		294.5
(0.8)
P 		160.1
(-3)
P 		212
B 312.4
(0)
P 		434.6
(3)
P 		322.3
(0.3)
P 		187.8
(-3)
P 		247
C 370.4
(2.8)
P 		376.6
(3)
P 		327.2
(1.2)
P 		212.5
(-3)
P 		164
avr 330.8
(1.2) 		394.4
(3) 		314.7
(0.7) 		186.8
(-3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 652
1 2 3 4 5 6 range
A 70.3
(-3)
A 		66.8
(-3)
A 		87.1
(-2.8)
P 		363.7
(0.3)
P 		600.7
(3)
P 		436.4
(1.2)
P 		534
B 51.2
(-3)
P 		54.6
(-3)
P 		50.8
(-3)
P 		459.4
(0.8)
P 		696.6
(3)
P 		420.3
(0.4)
P 		646
C 44.3
(-3)
A 		49
(-2.9)
A 		109.4
(-2.1)
P 		395.9
(1.9)
P 		476
(3)
P 		420.6
(2.2)
P 		432
avr 55.3
(-3) 		56.8
(-3) 		82.4
(-2.7) 		406.3
(0.9) 		591.1
(3) 		425.8
(1.1) 		536
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 112.7
(3)
P 		80.8
(0.9)
P 		77
(0.6)
P 		23.4
(-3)
P 		89
B 99.6
(2.3)
P 		107.3
(3)
P 		74.7
(0.1)
P 		40
(-3)
P 		67
C 122.6
(3)
P 		108.3
(2)
P 		114
(2.4)
P 		35.8
(-3)
P 		87
avr 111.6
(3) 		98.8
(2) 		88.6
(1.2) 		33.1
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 13
(-3)
A 		23.7
(-2.6)
A 		19
(-2.8)
P 		92.2
(-0.2)
P 		181.3
(3)
P 		106.2
(0.3)
P 		168
B 17.8
(-2.9)
P 		18.2
(-2.9)
P 		12.3
(-3)
P 		121.7
(-0.6)
P 		283
(3)
P 		156.7
(0.2)
P 		271
C 16.4
(-2.9)
A 		15
(-3)
A 		27.8
(-2.4)
P 		79.6
(-0.2)
P 		154
(3)
P 		140.8
(2.4)
P 		139
avr 15.7
(-3) 		19
(-2.9) 		19.7
(-2.9) 		97.8
(-0.4) 		206.1
(3) 		134.6
(0.7) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7510
Sequence Type Exemplar sequence
Representative Public ID D1044.1 NCBI
Target Description D1044.1 /REP_DB=WormBase Gene ID /WP=CE01204 /TR=SW:P41949 /GB=AAA50733.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065784 NCBI Caenorhabditis elegans D1044.1 (D1044.1) mRNA, complete cds. 11/11 None
SNAP00000008692 ENSEMBL cdna:SNAP chromosome:CEL140:III:5544258:5546180:1 11/11 None
GENEFINDER00000008696 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5544258:5546180:1 11/11 None
D1044.1 ENSEMBL cdna:known chromosome:CEL140:III:5542164:5546241:1 gene:D1044.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5542162-5546179(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1044.1
Entrez Gene 175763 Entrez gene
SwissProt P41949 EMBL-EBI
WormBase CE01204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498185 D1044.1 [Caenorhabditis elegans] sp|P41949|YLK1_CAEEL Hypothetical protein D1044.1 in chromosome III 0.0
blast AAA50733 Hypothetical protein D1044.1 [Caenorhabditis elegans] 0.0
blast AAA50733 Hypothetical protein D1044.1 [Caenorhabditis elegans] 1.0E-174
blast NP_498185 D1044.1 [Caenorhabditis elegans] sp|P41949|YLK1_CAEEL Hypothetical protein D1044.1 in chromosome III 1.0E-174
blast CAE56365 Hypothetical protein CBG24040 [Caenorhabditis briggsae] 1.0E-149
blast CAE56365 Hypothetical protein CBG24040 [Caenorhabditis briggsae] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:187222_AT
atgtgctttatgatgcggcctatatcaggatgttgcacaacgacacccttgattttgaaa
agttatgcccggcggagctctccggaagaattcaagaagttaagcatgcttttgatgaag
atggagttagaaattccgaaaagaaaaacgaaaaacttggaatgccattggtgatatgtc
ataatgatttgaacgcgtcaaatgttctatggaataatgaaactggaaagatccaggcat
ttatcgatttccagcacgtgtcaaagggtcccgtctcctttgatattattcgtattttgt
gccttggattgtcagtggaaaatcgaagagcaaatactcaaagatacctgaaccactact
atacgaccttcaaatctcatttttccacggctcccttcactttctcccaactcgaagaat
cctatcgaactcacttcaattttgtgaatgccacgtcactattcagtctgtcgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCTTTATGATGCGGCCTATAT 551 49 701 Antisense
TGCACAACGACACCCTTGATTTTGA 261 577 734 Antisense
AAAAGTTATGCCCGGCGGAGCTCTC 318 129 758 Antisense
CAGGCATTTATCGATTTCCAGCACG 572 207 934 Antisense
TTCCAGCACGTGTCAAAGGGTCCCG 419 699 949 Antisense
GTCCCGTCTCCTTTGATATTATTCG 609 475 968 Antisense
GAACCACTACTATACGACCTTCAAA 183 339 1050 Antisense
GACCTTCAAATCTCATTTTTCCACG 431 381 1065 Antisense
TTCACTTTCTCCCAACTCGAAGAAT 181 687 1096 Antisense
GAATCCTATCGAACTCACTTCAATT 648 329 1117 Antisense
CCACGTCACTATTCAGTCTGTCGTA 468 273 1151 Antisense
Sequence Source Affymetrix Proprietary Database