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[187221_at]

Description F34H10.4 /REP_DB=WormBase Gene ID /WP=CE01574 /TR=SW:Q09317 /GB=CAA87037.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 28.2
(-1)
A 		4.6
(-3)
A 		4.5
(-3)
A 		76.3
(3)
A 		72
B 4.7
(-3)
A 		18.7
(-1.4)
A 		5.5
(-2.9)
A 		56.9
(3)
A 		52
C 6.6
(-2.6)
A 		6.3
(-2.7)
A 		2.8
(-3)
A 		65.2
(3)
A 		62
avr 13.2
(-2.1) 		9.9
(-2.5) 		4.3
(-3) 		66.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 38.2
(1.3)
A 		7.6
(-3)
A 		27
(-0.3)
A 		15.2
(-1.9)
A 		19.4
(-1.3)
A 		50.3
(3)
A 		43
B 30.6
(-0.3)
A 		21
(-2.4)
A 		34.1
(0.4)
A 		23.7
(-1.8)
A 		46.1
(3)
A 		18
(-3)
A 		28
C 12.5
(-3)
A 		56.9
(3)
A 		30
(-0.6)
A 		19.1
(-2.1)
A 		26.3
(-1.1)
A 		19.5
(-2.1)
A 		44
avr 27.1
(1.1) 		28.5
(1.9) 		30.4
(2.9) 		19.3
(-3) 		30.6
(3) 		29.3
(2.3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.3
(2.5)
A 		1
(-3)
A 		1.2
(-2.9)
A 		11.2
(3)
A 		10
B 1.5
(-2.9)
A 		4.6
(-1.2)
A 		1.3
(-3)
A 		12.1
(3)
A 		11
C 2.2
(-2.3)
A 		1.8
(-2.5)
A 		1
(-3)
A 		11
(3)
A 		10
avr 4.7
(-0.9) 		2.5
(-2.2) 		1.2
(-3) 		11.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7
(-0.3)
A 		2.7
(-3)
A 		5.9
(-1)
A 		3.8
(-2.3)
A 		5.9
(-1)
A 		12.2
(3)
A 		10
B 10.6
(-0.9)
A 		7
(-2.7)
A 		8.3
(-2)
A 		6.3
(-3)
A 		18.7
(3)
A 		6.7
(-2.8)
A 		12
C 4.7
(-2.6)
A 		17.4
(3)
A 		7.6
(-1.3)
A 		3.8
(-3)
A 		8.5
(-0.9)
A 		6.5
(-1.8)
A 		14
avr 7.4
(-0.4) 		9
(1.1) 		7.3
(-0.5) 		4.6
(-3) 		11
(3) 		8.5
(0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17057
Sequence Type Exemplar sequence
Representative Public ID F34H10.4 NCBI
Target Description F34H10.4 /REP_DB=WormBase Gene ID /WP=CE01574 /TR=SW:Q09317 /GB=CAA87037.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077224 NCBI Caenorhabditis elegans F34H10.4 (F34H10.4) mRNA, complete cds. 11/11 None
F34H10.4 ENSEMBL cdna:known chromosome:CEL140:X:9648464:9650843:1 gene:F34H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008834 7/11 Cross Hyb Matching Probes None
GENEFINDER00000008839 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9648463-9650843(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F34H10.4
Entrez Gene 185245 Entrez gene
SwissProt Q09317 EMBL-EBI
WormBase CE01574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87037 Hypothetical protein F34H10.4 [Caenorhabditis elegans] ref|NP_509625.1| F34H10.4 [Caenorhabditis elegans] sp|Q09317|YQX4_CAEEL Hypothetical protein F34H10.4 in chromosome X 0.0
blast CAE69776 Hypothetical protein CBG16061 [Caenorhabditis briggsae] 9.0E-38
Sequence
Target Sequence 
>C. ELEGANS:187221_AT
tgtcaactggacctatgctcatctttccaatacctgctgaagactacaaccgaaaatgct
caagacaagcaaaacgtgctgaaagaaattcttcatcattcagacttggtacttcatcat
gcggcagatcaatgcccatttgttttgaaagaggacatgattgaactctctacatgcatc
ggtcttatttatgaatctcttgaaagaaacacggatttcgagtcatacttgaaagttaga
agcgttgtccaatatcttgtatctaaacattatattttgatgatcctaagttccttaaac
tttcaatatgtaacaccgattgttttttataatatcttttctgtttccaattcaattcaa
ttatgttcttctgttttttttcttaaagtttattcatattctttgaaaaccatcttatcg
gctcttccacaactctgtttaatgttccccgttaattctgcccgccaggctcaaaaccat
gtagttgtattcttaccaatttatatgacttctgaagttttacccatccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCAACTGGACCTATGCTCATCTT 516 559 790 Antisense
CTCATCTTTCCAATACCTGCTGAAG 614 229 807 Antisense
CAGACTTGGTACTTCATCATGCGGC 487 193 890 Antisense
GAGGACATGATTGAACTCTCTACAT 348 405 940 Antisense
CTCTCTACATGCATCGGTCTTATTT 552 229 955 Antisense
AACACGGATTTCGAGTCATACTTGA 627 135 997 Antisense
GAAGCGTTGTCCAATATCTTGTATC 419 343 1028 Antisense
ATATCTTTTCTGTTTCCAATTCAAT 416 19 1121 Antisense
TGAAAACCATCTTATCGGCTCTTCC 176 573 1193 Antisense
CACAACTCTGTTTAATGTTCCCCGT 250 195 1217 Antisense
ACTTCTGAAGTTTTACCCATCCATT 59 103 1297 Antisense
Sequence Source Affymetrix Proprietary Database