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[187219_at]

Description C34C12.6 /REP_DB=WormBase Gene ID /WP=CE01514 /TR=SW:Q09270 /GB=CAA87097.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 184
(-1.5)
M 		424.8
(3)
P 		366
(1.9)
P 		106.9
(-3)
A 		318
B 194.5
(-1.6)
M 		453.1
(3)
P 		386.4
(1.8)
P 		116.3
(-3)
A 		337
C 197.9
(-1.6)
A 		431
(3)
P 		411
(2.6)
P 		126.7
(-3)
A 		304
avr 192.1
(-1.6) 		436.3
(3) 		387.8
(2.1) 		116.6
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 282.1
(0.5)
P 		335
(1.6)
P 		380.2
(2.5)
P 		402.8
(3)
P 		190
(-1.4)
P 		112.6
(-3)
A 		290
B 379.7
(1.3)
P 		364.7
(1)
P 		322.2
(0.3)
P 		472.8
(3)
P 		311.9
(0.1)
P 		142.5
(-3)
A 		330
C 329.2
(0.1)
P 		347.2
(0.4)
P 		283.8
(-0.6)
P 		511.5
(3)
P 		212.6
(-1.7)
P 		131.9
(-3)
A 		380
avr 330.3
(0.6) 		349
(1) 		328.7
(0.6) 		462.4
(3) 		238.2
(-1) 		129
(-3) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 67
(0.8)
M 		92.2
(2.7)
P 		95.7
(3)
P 		15.7
(-3)
A 		80
B 62
(-0.4)
M 		111.9
(3)
P 		89.5
(1.5)
P 		24.8
(-3)
A 		87
C 65.5
(-0.8)
A 		123.9
(2)
P 		143.3
(3)
P 		21.4
(-3)
A 		122
avr 64.8
(-0) 		109.3
(3) 		109.5
(3) 		20.6
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 52
(-1.4)
P 		119.2
(3)
P 		82.8
(0.6)
P 		102.2
(1.9)
P 		57.3
(-1)
P 		27.4
(-3)
A 		92
B 132.1
(3)
P 		121.4
(2.2)
P 		78.2
(-1.1)
P 		125.2
(2.5)
P 		126.7
(2.6)
P 		53.2
(-3)
A 		79
C 122
(3)
P 		106
(1.8)
P 		72.2
(-0.8)
P 		102.9
(1.5)
P 		68.8
(-1.1)
P 		44.2
(-3)
A 		78
avr 102
(1.9) 		115.5
(3) 		77.7
(-0.1) 		110.1
(2.6) 		84.3
(0.5) 		41.6
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6642
Sequence Type Exemplar sequence
Representative Public ID C34C12.6 NCBI
Target Description C34C12.6 /REP_DB=WormBase Gene ID /WP=CE01514 /TR=SW:Q09270 /GB=CAA87097.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065316 NCBI Caenorhabditis elegans C34C12.6 (C34C12.6) mRNA, complete cds. 11/11 None
SNAP00000028576 ENSEMBL cdna:SNAP chromosome:CEL140:III:3482580:3484731:1 11/11 None
GENEFINDER00000028580 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3482580:3484731:1 11/11 None
C34C12.6.2 ENSEMBL cdna:known chromosome:CEL140:III:3482573:3484763:1 gene:C34C12.6 11/11 None
C34C12.6.1 ENSEMBL cdna:known chromosome:CEL140:III:3482575:3484826:1 gene:C34C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3482579-3484731(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34C12.6
Entrez Gene 175452 Entrez gene
SwissProt Q09270 EMBL-EBI
WormBase CE01514 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87097 Hypothetical protein C34C12.6 [Caenorhabditis elegans] ref|NP_497717.1| C34C12.6 [Caenorhabditis elegans] sp|Q09270|YQF6_CAEEL Hypothetical protein C34C12.6 in chromosome III 0.0
blast CAE64954 Hypothetical protein CBG09785 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 0.0041
Sequence
Target Sequence 
>C. ELEGANS:187219_AT
gtcgggctacatgaagctctggcaaattcgaagcgagctttggcaagattggttcccaga
aatggtccaacgaatctatttgaccaatccaccacggttactcgggcttctgtggaaagt
tgctcgggttttcttgtcggaggaaaatttgaagaggattgagattatttccgataaatc
cgacttggcgggaagttcttgccgccctggcgaattcgtgaatacagtacccccaggcga
cgagacgggggtctcggtccgtcgaaaaattacgtctgccgactattacaagccatatca
acactacaaagagcacggaatcgatcgtccaaagtcgagtcacaaggatgtttctccggc
cgaaaagttcgtgttcaagattcaagtgccaaacggaaagaagcttctgtgggacttcac
ggctagtggagaacttcaatttgctatttttagaggcaataaccgcaacgatctcgtctt
cccaagtctccatctcatcaccaacaaactcaacgaagaaggaagcctggacaatgtctc
ggattcagaaatttccttcgaattccagaacctatccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGGCTACATGAAGCTCTGGCAA 138 473 570 Antisense
CCACGGTTACTCGGGCTTCTGTGGA 328 273 661 Antisense
TTGCTCGGGTTTTCTTGTCGGAGGA 397 701 689 Antisense
CCGACTTGGCGGGAAGTTCTTGCCG 284 263 749 Antisense
CTTGCCGCCCTGGCGAATTCGTGAA 151 219 767 Antisense
ACGTCTGCCGACTATTACAAGCCAT 364 95 841 Antisense
GAGTCACAAGGATGTTTCTCCGGCC 421 397 906 Antisense
GAAGCTTCTGTGGGACTTCACGGCT 661 341 969 Antisense
AGGCAATAACCGCAACGATCTCGTC 83 53 1023 Antisense
CATCTCATCACCAACAAACTCAACG 188 213 1060 Antisense
CCTTCGAATTCCAGAACCTATCCGG 111 265 1124 Antisense
Sequence Source Affymetrix Proprietary Database