[Home] | [Total List]

[187217_at]

Description Y62E10A.11A /REP_DB=WormBase Gene ID /WP=CE22700 /TR=Q9U1X5 /GB=CAB60599.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 58      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 446.3
(2.5)
P 		380
(0.2)
P 		461.5
(3)
P 		287.1
(-3)
M 		174
B 364.4
(-1.8)
P 		555
(3)
P 		478.8
(1.1)
P 		317
(-3)
P 		238
C 350.4
(-1.4)
P 		413.4
(0.6)
P 		491.7
(3)
P 		298
(-3)
P 		194
avr 387
(-0.1) 		449.5
(2.1) 		477.3
(3) 		300.7
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 473.5
(3)
P 		416.7
(-1.1)
P 		421.2
(-0.8)
P 		455.7
(1.7)
P 		444.8
(0.9)
P 		390.3
(-3)
P 		83
B 419.6
(0)
P 		466.9
(1.4)
P 		374.2
(-1.3)
P 		398.9
(-0.6)
P 		522.2
(3)
P 		314.4
(-3)
P 		208
C 517
(3)
P 		472.5
(1.8)
P 		433.4
(0.7)
P 		433.1
(0.7)
P 		458.9
(1.4)
P 		299.1
(-3)
P 		218
avr 470
(2.8) 		452
(2) 		409.6
(0.2) 		429.2
(1) 		475.3
(3) 		334.6
(-3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 162.5
(3)
P 		82.5
(-1)
P 		120.6
(0.9)
P 		42
(-3)
M 		121
B 116.2
(1.2)
P 		137.1
(3)
P 		111
(0.8)
P 		67.5
(-3)
P 		70
C 116
(0.3)
P 		118.9
(0.4)
P 		171.4
(3)
P 		50.3
(-3)
P 		121
avr 131.6
(2.8) 		112.8
(1.4) 		134.3
(3) 		53.3
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 87.3
(-3)
P 		148.2
(3)
P 		91.7
(-2.6)
P 		115.6
(-0.2)
P 		134.2
(1.6)
P 		95
(-2.2)
P 		61
B 146
(-0.3)
P 		155.4
(0.2)
P 		90.9
(-3)
P 		105.7
(-2.3)
P 		212.2
(3)
P 		117.2
(-1.7)
P 		121
C 191.6
(3)
P 		144.2
(0.3)
P 		110.3
(-1.7)
P 		87.1
(-3)
P 		148.5
(0.5)
P 		100.1
(-2.3)
P 		105
avr 141.6
(0.9) 		149.3
(1.6) 		97.6
(-3) 		102.8
(-2.5) 		165
(3) 		104.1
(-2.4) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8616
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.11A NCBI
Target Description Y62E10A.11A /REP_DB=WormBase Gene ID /WP=CE22700 /TR=Q9U1X5 /GB=CAB60599.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008079 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13386348:13386814:1 11/11 None
GENEFINDER00000008092 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13386348:13386814:1 11/11 None
Y62E10A.11 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:13386348:13387211:1 gene:Y62E10A.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13386353-13386820(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y62E10A.11
Sequence
Target Sequence 
>C. ELEGANS:187217_AT
tttattccatcttgtgaactccgtggagaaaggaagcggttctgagcttactgttcgtct
tcgaaacgtcgaggccgacatcgcaagcttcaaagacgctctgaaatcgattcccgacat
cggcgtcgaagagtacaaggaaagacggaaaatcgccgcgctctacaagcagattgagaa
gaaagatgagctcctcgacgaactcgcagccttcagccttgatgcagccctcaaaaagcc
cgacggagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATTCCATCTTGTGAACTCCGTG 247 673 72 Antisense
GAAGCGGTTCTGAGCTTACTGTTCG 101 343 104 Antisense
GTTCGTCTTCGAAACGTCGAGGCCG 339 441 124 Antisense
GGCCGACATCGCAAGCTTCAAAGAC 493 543 144 Antisense
AAAGACGCTCTGAAATCGATTCCCG 580 123 163 Antisense
GAAATCGATTCCCGACATCGGCGTC 546 361 174 Antisense
GAAAGACGGAAAATCGCCGCGCTCT 42 361 211 Antisense
CGCCGCGCTCTACAAGCAGATTGAG 675 255 225 Antisense
GAAAGATGAGCTCCTCGACGAACTC 213 359 252 Antisense
AGCCTTGATGCAGCCCTCAAAAAGC 677 81 286 Antisense
GCCCTCAAAAAGCCCGACGGAGAGC 53 285 298 Antisense
Sequence Source Affymetrix Proprietary Database