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[187216_s_at]

Description D1044.2 /REP_DB=WormBase Gene ID /WP=CE24867 /TR=SW:P41950 /GB=AAA50734.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 12.4
(-3)
A 		53
(3)
A 		39.7
(1)
A 		14.7
(-2.7)
A 		41
B 16.3
(-1.4)
A 		45.1
(3)
A 		33.4
(1.2)
A 		6.2
(-3)
A 		39
C 6
(-3)
A 		7.8
(-2.8)
A 		23
(-0.8)
A 		53.3
(3)
A 		47
avr 11.6
(-3) 		35.3
(3) 		32
(2.2) 		24.7
(0.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 61.4
(-2.8)
A 		76.1
(-2.6)
P 		41.7
(-3)
A 		482.3
(2)
P 		569.2
(3)
P 		86.8
(-2.5)
P 		528
B 50.8
(-3)
A 		101.3
(-2.3)
M 		67.5
(-2.8)
A 		485.7
(3)
P 		423
(2.1)
P 		113.7
(-2.1)
P 		435
C 72.4
(-2.7)
A 		64.6
(-2.8)
A 		43.2
(-3)
A 		395.6
(1.1)
P 		558.7
(3)
P 		109.5
(-2.2)
P 		516
avr 61.5
(-2.9) 		80.7
(-2.6) 		50.8
(-3) 		454.5
(2.2) 		517
(3) 		103.3
(-2.3) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.5
(-1.5)
A 		11.5
(3)
A 		10.4
(2.3)
A 		2.1
(-3)
A 		9
B 5.2
(-0.6)
A 		11.1
(3)
A 		7.7
(0.9)
A 		1.3
(-3)
A 		10
C 2
(-3)
A 		2.2
(-2.8)
A 		8
(2.1)
A 		9
(3)
A 		7
avr 3.9
(-3) 		8.3
(2.5) 		8.7
(3) 		4.1
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 11.3
(-2.9)
A 		27.1
(-2.3)
P 		9.1
(-3)
A 		122.3
(1.2)
P 		171.8
(3)
P 		21.1
(-2.6)
P 		163
B 17.7
(-2.9)
A 		33.7
(-2.3)
M 		16.4
(-3)
A 		128.6
(1.3)
P 		171.9
(3)
P 		42.4
(-2)
P 		156
C 26.8
(-2.4)
A 		19.7
(-2.7)
A 		11
(-3)
A 		79.5
(-0.6)
P 		180.8
(3)
P 		36.6
(-2.1)
P 		170
avr 18.6
(-2.8) 		26.8
(-2.5) 		12.2
(-3) 		110.1
(0.6) 		174.8
(3) 		33.4
(-2.2) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187216_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7097
Sequence Type Exemplar sequence
Representative Public ID D1044.2 NCBI
Target Description D1044.2 /REP_DB=WormBase Gene ID /WP=CE24867 /TR=SW:P41950 /GB=AAA50734.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065781(11), NM_065780(11), NM_065782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065781 NCBI Caenorhabditis elegans D1044.2c (D1044.2) mRNA, complete cds. 11/11 None
NM_065780 NCBI Caenorhabditis elegans D1044.2a (D1044.2) mRNA, complete cds. 11/11 A 
NM_065782 NCBI Caenorhabditis elegans D1044.2b (D1044.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000008695 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5527060:5535237:1 11/11 None
SNAP00000008690 ENSEMBL cdna:SNAP chromosome:CEL140:III:5527711:5533977:1 11/11 None
D1044.2c ENSEMBL cdna:known chromosome:CEL140:III:5526026:5535427:1 gene:D1044.2 11/11 None
D1044.2a ENSEMBL cdna:known chromosome:CEL140:III:5526059:5535435:1 gene:D1044.2 11/11 A 
D1044.2b ENSEMBL cdna:known chromosome:CEL140:III:5531077:5535190:1 gene:D1044.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5526004-5535189(+) 100.0 100.0
Public Domain and Genome References
Ensembl D1044.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02474 Hypothetical protein D1044.2c [Caenorhabditis elegans] ref|NP_498182.1| D1044.2c [Caenorhabditis elegans] sp|P41950|YLK2_CAEEL Hypothetical protein D1044.2 precursor 0.0
blast AAL02472 Hypothetical protein D1044.2a [Caenorhabditis elegans] ref|NP_498181.1| D1044.2a [Caenorhabditis elegans] 0.0
blast CAE56925 Hypothetical protein CBG24770 [Caenorhabditis briggsae] 0.0
blast AAL02473 Hypothetical protein D1044.2b [Caenorhabditis elegans] ref|NP_498183.1| D1044.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-7
Pfam IPR010362 EMBL-EBI Nid 2.4E-35
Pfam IPR010362 EMBL-EBI Nid 2.0E-36
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-7
Pfam IPR010362 EMBL-EBI Nid 2.4E-35
Pfam IPR010362 EMBL-EBI Nid 2.0E-36
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-7
Pfam IPR010362 EMBL-EBI Nid 2.4E-35
Pfam IPR010362 EMBL-EBI Nid 2.0E-36
Pfam IPR010362 EMBL-EBI Nid 1.2E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498182.1 2 21-40,958-980
NP_498181.1 2 21-40,958-980
NP_498183.1 1 408-430
D1044.2c 2 21-40,958-980
D1044.2a 2 21-40,958-980
D1044.2b 1 408-430
GENEFINDER00000008695 3 15-37,50-67,991-1013
SNAP00000008690 2 7-24,984-1006
Sequence
Target Sequence 
>C. ELEGANS:187216_S_AT
acaccacagccagaggatctcagtggagatgctcgcgttatagaaaccactgaagaagat
gaagaagaagctgagatttccacagaaacaactactgaaatgagttctacaaccacaact
acaaaggcccatacaactacaaccacaatgatgattccaacagaagctccaccatcaatt
ttcgtttttactacaactcaaaagccacgtgcccagagtacaactcaaaagagaataata
gttcaacagccatcaattgtagtgaattctcagccaccaaaacagaggaatgataatcag
ccaactgttaatgtgggacacgcagaggagcaatcaccaagactagcaattctgctgcca
gtaatgataattctcgcatggcttgtaattctcgtgtgcatcggagcagttgtatgctgt
aaacgacgaaattctcgagaatcttcacaactccgagcaatgtacggagccgcgtacggg
gtacggccgacggcatacgagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCACAGCCAGAGGATCTCAGTG 540 109 2716 Antisense
GATGCTCGCGTTATAGAAACCACTG 445 413 2743 Antisense
GATGATTCCAACAGAAGCTCCACCA 619 409 2865 Antisense
CTACAACTCAAAAGCCACGTGCCCA 420 227 2906 Antisense
GTGAATTCTCAGCCACCAAAACAGA 237 481 2977 Antisense
GGGACACGCAGAGGAGCAATCACCA 299 495 3030 Antisense
AAGACTAGCAATTCTGCTGCCAGTA 554 153 3054 Antisense
CTCGCATGGCTTGTAATTCTCGTGT 399 231 3088 Antisense
AATTCTCGTGTGCATCGGAGCAGTT 375 177 3102 Antisense
GAGAATCTTCACAACTCCGAGCAAT 280 391 3152 Antisense
GGGTACGGCCGACGGCATACGAGTC 238 497 3194 Antisense
Sequence Source Affymetrix Proprietary Database