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[187215_at]

Description C38C10.3 /REP_DB=WormBase Gene ID /WP=CE00106 /TR=SW:Q03568 /GB=CAA79547.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 55.8
(-0.8)
A 		62
(-0.4)
A 		18
(-3)
A 		120.1
(3)
A 		102
B 20.7
(-2.2)
A 		11.8
(-3)
A 		50.5
(0.4)
A 		79.2
(3)
A 		67
C 53
(0.4)
A 		16.7
(-3)
A 		38.6
(-1)
A 		81.3
(3)
A 		65
avr 43.2
(-1.8) 		30.2
(-3) 		35.7
(-2.5) 		93.5
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 35.3
(-3)
A 		39.9
(-2.8)
A 		62.3
(-1.7)
A 		44.7
(-2.6)
A 		129.8
(1.4)
A 		164.6
(3)
A 		129
B 52.6
(-3)
A 		79.6
(-1.1)
A 		52
(-3)
A 		82.3
(-0.9)
A 		129.5
(2.4)
A 		138.7
(3)
P 		87
C 55.7
(-1.5)
A 		67.5
(-0.8)
A 		30.8
(-3)
A 		95.3
(0.9)
A 		119.8
(2.3)
A 		130.7
(3)
M 		100
avr 47.9
(-3) 		62.3
(-2.1) 		48.4
(-3) 		74.1
(-1.4) 		126.4
(1.9) 		144.7
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.3
(3)
A 		13.5
(0.4)
A 		4.7
(-3)
A 		17.6
(2)
A 		16
B 6.6
(-1.4)
A 		2.9
(-3)
A 		11.7
(0.8)
A 		16.9
(3)
A 		14
C 17.6
(3)
A 		4.8
(-3)
A 		13.4
(1)
A 		13.7
(1.2)
A 		13
avr 14.8
(2.1) 		7.1
(-3) 		9.9
(-1.1) 		16.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 6.5
(-3)
A 		14.2
(-1.6)
A 		13.6
(-1.7)
A 		11.3
(-2.1)
A 		39.2
(2.8)
A 		40.1
(3)
A 		34
B 18.3
(-2.1)
A 		26.5
(-0.9)
A 		12.6
(-3)
A 		21.8
(-1.6)
A 		52.6
(3)
A 		51.7
(2.9)
P 		40
C 20.7
(-0.9)
A 		20.6
(-0.9)
A 		7.9
(-3)
A 		19.2
(-1.1)
A 		38.8
(2.2)
A 		43.8
(3)
M 		36
avr 15.2
(-2.3) 		20.4
(-1.4) 		11.4
(-3) 		17.4
(-1.9) 		43.5
(2.7) 		45.2
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7967
Sequence Type Exemplar sequence
Representative Public ID C38C10.3 NCBI
Target Description C38C10.3 /REP_DB=WormBase Gene ID /WP=CE00106 /TR=SW:Q03568 /GB=CAA79547.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066662 NCBI Caenorhabditis elegans C38C10.3 (C38C10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000012415 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9382539:9385493:-1 11/11 None
SNAP00000012403 ENSEMBL cdna:SNAP chromosome:CEL140:III:9384068:9385481:-1 11/11 None
C38C10.3 ENSEMBL cdna:known chromosome:CEL140:III:9384068:9385493:-1 gene:C38C10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012203 5/11 Cross Hyb Matching Probes None
SNAP00000012188 7/11 Cross Hyb Matching Probes None
F58A4.12 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9384063-9385489(-) 100.0 100.0
chrIII:9601215-9602093(-) 82.89 82.89
Public Domain and Genome References
Gene Title
Ensembl C38C10.3
Entrez Gene 183309 Entrez gene
SwissProt Q03568 EMBL-EBI
WormBase CE00106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79547 Hypothetical protein C38C10.3 [Caenorhabditis elegans] ref|NP_499063.1| C38C10.3 [Caenorhabditis elegans] sp|Q03568|YLD3_CAEEL Hypothetical protein C38C10.3 in chromosome III 1.0E-153
blast CAA79547 Hypothetical protein C38C10.3 [Caenorhabditis elegans] ref|NP_499063.1| C38C10.3 [Caenorhabditis elegans] sp|Q03568|YLD3_CAEEL Hypothetical protein C38C10.3 in chromosome III 1.0E-152
blast CAA79547 Hypothetical protein C38C10.3 [Caenorhabditis elegans] ref|NP_499063.1| C38C10.3 [Caenorhabditis elegans] sp|Q03568|YLD3_CAEEL Hypothetical protein C38C10.3 in chromosome III 1.0E-150
blast P34598 Hypothetical protein ZC84.5 in chromosome III 3.0E-44
blast P34598 Hypothetical protein ZC84.5 in chromosome III 4.0E-44
blast CAE65268 Hypothetical protein CBG10162 [Caenorhabditis briggsae] 3.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007465 EMBL-EBI Protein of unknown function DUF508 1.5E-124
Pfam IPR007465 EMBL-EBI Protein of unknown function DUF508 1.5E-124
Sequence
Target Sequence 
>C. ELEGANS:187215_AT
ttcatccggtcttgtcagtcagatcagtagtactacatcgagcgagaggaaaagacgtac
tctggccagaccgtcgagttcttcggagagtgatttgaaagtcggaaatattcaacaatc
gaatcagtattttactcttccgtcggtaatgaagccatctgcactttctacggaagatcc
aaagaaggtgattgttcaatcgaatacttcttcttcatccatgtctgatgcttcttctaa
gaaaagtcttccgacttatacatacttatcgggacatacgacaggatctgctagatacgt
tacaatggttaatgtcaagtttctgcttcttcattgtgatgtactccaaagacgtgctca
gtccatgtttactgacgagtttccctcggactgtcgtttggaagaagttgttatcaactt
ccatcaactctgttgtcgccaacttcttgatcaaaacttcaatcctcgtctgtcgtattg
tatcggagagctcaactactcggattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATCCGGTCTTGTCAGTCAGATC 152 679 294 Antisense
GCCAGACCGTCGAGTTCTTCGGAGA 194 281 358 Antisense
TAATGAAGCCATCTGCACTTTCTAC 637 635 440 Antisense
AATCGAATACTTCTTCTTCATCCAT 326 169 491 Antisense
ATCCATGTCTGATGCTTCTTCTAAG 637 39 510 Antisense
AGTTTCTGCTTCTTCATTGTGATGT 554 63 611 Antisense
AAGACGTGCTCAGTCCATGTTTACT 592 153 642 Antisense
GTTATCAACTTCCATCAACTCTGTT 503 447 703 Antisense
TGTTGTCGCCAACTTCTTGATCAAA 10 563 724 Antisense
ATCAAAACTTCAATCCTCGTCTGTC 509 27 743 Antisense
CGGAGAGCTCAACTACTCGGATTCC 91 243 777 Antisense
Sequence Source Affymetrix Proprietary Database