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[187212_at]

Description C48B4.11 /REP_DB=WormBase Gene ID /WP=CE00487 /TR=SW:P34365 /GB=CAA82382.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 32      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 83
(-3)
P 		142
(1.4)
P 		163.5
(3)
P 		141.9
(1.4)
P 		81
B 111.7
(-3)
P 		189.7
(1.3)
P 		219.8
(3)
P 		196.2
(1.7)
P 		108
C 103.2
(-3)
P 		154.3
(0.2)
P 		190.9
(2.6)
P 		197.8
(3)
P 		95
avr 99.3
(-3) 		162
(1.1) 		191.4
(3) 		178.6
(2.2) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 111.8
(-3)
P 		122.1
(-2.9)
P 		166
(-2.3)
P 		258.8
(-1.2)
P 		544.2
(2.3)
P 		599.2
(3)
P 		487
B 102.8
(-3)
P 		137.4
(-2.7)
P 		170.6
(-2.4)
P 		320.4
(-1)
P 		469.2
(0.4)
P 		744.8
(3)
P 		642
C 96.5
(-3)
P 		135.9
(-2.7)
P 		139.2
(-2.7)
P 		363
(-0.8)
P 		382.5
(-0.7)
P 		837.8
(3)
P 		741
avr 103.7
(-3) 		131.8
(-2.7) 		158.6
(-2.5) 		314.1
(-1) 		465.3
(0.5) 		727.3
(3) 		624
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 30.2
(-0.4)
P 		30.8
(-0.3)
P 		42.7
(3)
P 		20.8
(-3)
P 		22
B 35.6
(-3)
P 		46.8
(1.4)
P 		50.9
(3)
P 		41.8
(-0.6)
P 		15
C 34.2
(-2.8)
P 		44.4
(-1)
P 		66.5
(3)
P 		33.3
(-3)
P 		33
avr 33.3
(-2.6) 		40.7
(-0.6) 		53.4
(3) 		32
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 20.6
(-3)
P 		43.4
(-2)
P 		36.1
(-2.4)
P 		65.6
(-1.1)
P 		164.2
(3)
P 		145.9
(2.2)
P 		144
B 35.8
(-3)
P 		45.7
(-2.8)
P 		41.4
(-2.9)
P 		84.9
(-1.8)
P 		190.6
(0.8)
P 		277.7
(3)
P 		242
C 35.8
(-3)
P 		41.5
(-2.9)
P 		35.4
(-3)
P 		73
(-2.1)
P 		123.8
(-0.8)
P 		280.5
(3)
P 		245
avr 30.7
(-3) 		43.5
(-2.6) 		37.6
(-2.8) 		74.5
(-1.7) 		159.5
(0.8) 		234.7
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7820
Sequence Type Exemplar sequence
Representative Public ID C48B4.11 NCBI
Target Description C48B4.11 /REP_DB=WormBase Gene ID /WP=CE00487 /TR=SW:P34365 /GB=CAA82382.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066713(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066713 NCBI Caenorhabditis elegans C48B4.11 (C48B4.11) mRNA, complete cds. 11/11 None
SNAP00000040763 ENSEMBL cdna:SNAP chromosome:CEL140:III:9564623:9565939:-1 11/11 None
GENEFINDER00000040775 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9564623:9565939:-1 11/11 None
C48B4.11 ENSEMBL cdna:known chromosome:CEL140:III:9564623:9565939:-1 gene:C48B4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9564618-9565935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C48B4.11
Entrez Gene 183569 Entrez gene
SwissProt P34365 EMBL-EBI
WormBase CE00487 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82382 Hypothetical protein C48B4.11 [Caenorhabditis elegans] ref|NP_499114.1| C48B4.11 [Caenorhabditis elegans] sp|P34365|YLHA_CAEEL Hypothetical protein C48B4.11 in chromosome III 1.0E-156
blast CAE65175 Hypothetical protein CBG10047 [Caenorhabditis briggsae] 8.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499114.1 6 13-32,36-55,68-90,186-208,213-235,261-283
C48B4.11 6 13-32,36-55,68-90,186-208,213-235,261-283
SNAP00000040763 6 13-32,36-55,68-90,186-208,213-235,261-283
GENEFINDER00000040775 6 13-32,36-55,68-90,186-208,213-235,261-283
Sequence
Target Sequence 
>C. ELEGANS:187212_AT
gacgacacgattgtttcacacgcatacagttctcgttcgtctgaacacggagtaccgatt
ggatgacccgaaatctcacgatttaggacctatcagacagagctctttccattcatctct
caacatcgctgcaattaccttcttctcaattttagcctacagtgggaacgaaagcattga
aaatatttgtttctggattgccattttcgaacttatcatgactgtaacctacgttttcaa
caattcttggattatgatgatccatttcgtgggacaggccattgttttctccgtgatctt
ctttctcctctgctgtcttttggcttacgagtattcaccagttgcggctctggaattcct
cgattcatacggactcgttcaagttaaaagctatgtggttagaagtccgtttttcgtagc
atcagctctctcggcagtttggttttcccgaatgatggccactcacgtgtttcttgtgga
agtggcaactgatacccgaattcatcgtcaccagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACACGATTGTTTCACACGCAT 673 379 384 Antisense
CACGCATACAGTTCTCGTTCGTCTG 118 201 402 Antisense
TCAGACAGAGCTCTTTCCATTCATC 630 623 476 Antisense
CAACATCGCTGCAATTACCTTCTTC 434 189 504 Antisense
TACCTTCTTCTCAATTTTAGCCTAC 703 649 519 Antisense
CGTGGGACAGGCCATTGTTTTCTCC 186 245 651 Antisense
TCTGCTGTCTTTTGGCTTACGAGTA 380 609 692 Antisense
ACGAGTATTCACCAGTTGCGGCTCT 369 93 710 Antisense
AAGTCCGTTTTTCGTAGCATCAGCT 495 157 786 Antisense
AATGATGGCCACTCACGTGTTTCTT 11 165 834 Antisense
ATACCCGAATTCATCGTCACCAGAT 406 23 875 Antisense
Sequence Source Affymetrix Proprietary Database