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[187211_at]

Description T28D9.1 /REP_DB=WormBase Gene ID /WP=CE28092 /TR=SW:Q10020 /GB=AAA68316.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 04      6grp_total > 19      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2444
1 2 3 4 range
A 4386
(-3)
P 		4991.9
(3)
P 		4947.6
(2.6)
P 		4862.5
(1.7)
P 		606
B 3944.5
(-3)
P 		6207.2
(3)
P 		5120.7
(0.1)
P 		5825.8
(2)
P 		2263
C 4424.6
(-3)
P 		6388.9
(3)
P 		5386.9
(-0.1)
P 		5097.7
(-0.9)
P 		1964
avr 4251.7
(-3) 		5862.7
(3) 		5151.7
(0.4) 		5262
(0.8) 		1611

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2600
1 2 3 4 5 6 range
A 4932.2
(3)
P 		4836.5
(2.6)
P 		4030.8
(-0.6)
P 		4272.5
(0.4)
P 		4072.6
(-0.4)
P 		3409.6
(-3)
P 		1523
B 5783.2
(3)
P 		4473.7
(-0.9)
P 		4527.3
(-0.7)
P 		4248.2
(-1.6)
P 		5477.9
(2.1)
P 		3766.6
(-3)
P 		2017
C 5879.5
(3)
P 		4454.3
(-0.3)
P 		3825.3
(-1.7)
P 		4126.8
(-1)
P 		5013.5
(1)
P 		3279.6
(-3)
P 		2600
avr 5531.6
(3) 		4588.2
(0.2) 		4127.8
(-1.1) 		4215.8
(-0.9) 		4854.7
(1) 		3485.3
(-3) 		2046
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1166
1 2 3 4 range
A 1596.9
(3)
P 		1083.6
(-0.5)
P 		1293.4
(0.9)
P 		711.8
(-3)
P 		885
B 1257.9
(-1.8)
P 		1533
(3)
P 		1186.6
(-3)
P 		1241.5
(-2)
P 		346
C 1464.7
(0.6)
P 		1836.9
(2.8)
P 		1877.5
(3)
P 		859.6
(-3)
P 		1018
avr 1439.8
(2.5) 		1484.5
(3) 		1452.5
(2.6) 		937.6
(-3) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1396
1 2 3 4 5 6 range
A 909.2
(-2.5)
P 		1720.1
(3)
P 		877.8
(-2.7)
P 		1083.6
(-1.3)
P 		1228.9
(-0.3)
P 		830.1
(-3)
P 		890
B 2012.3
(1.9)
P 		1489.1
(-0.9)
P 		1099.4
(-3)
P 		1125.2
(-2.9)
P 		2225.6
(3)
P 		1404.5
(-1.4)
P 		1126
C 2179.3
(3)
P 		1359.1
(-0.6)
P 		973.6
(-2.4)
P 		829.9
(-3)
P 		1622.3
(0.5)
P 		1097.9
(-1.8)
P 		1349
avr 1700.3
(3) 		1522.8
(1.5) 		983.6
(-3) 		1012.9
(-2.8) 		1692.3
(2.9) 		1110.8
(-1.9) 		717
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4995
Sequence Type Exemplar sequence
Representative Public ID T28D9.1 NCBI
Target Description T28D9.1 /REP_DB=WormBase Gene ID /WP=CE28092 /TR=SW:Q10020 /GB=AAA68316.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062911 NCBI Caenorhabditis elegans T28D9.1 (T28D9.1) mRNA, complete cds. 11/11 A 
T28D9.1.2 ENSEMBL cdna:known chromosome:CEL140:II:6492347:6493719:1 gene:T28D9.1 11/11 None
T28D9.1.1 ENSEMBL cdna:known chromosome:CEL140:II:6492349:6493719:1 gene:T28D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6492349-6493177(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28D9.1
Entrez Gene 174074 Entrez gene
SwissProt Q10020 EMBL-EBI
WormBase CE28092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68316 Hypothetical protein T28D9.1 [Caenorhabditis elegans] ref|NP_495312.1| T28D9.1 [Caenorhabditis elegans] sp|Q10020|YSX1_CAEEL Hypothetical protein T28D9.1 in chromosome II 3.0E-15
blast T16955 hypothetical protein T28D9.1 - Caenorhabditis elegans 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:187211_AT
ccgacgttgccgagactgttgtcgctcaagagccagaggttgtcgaaccagtcgaggaga
agccaaccgagactggatcggacgatgtcgttgtgattgatgagaagaccagtgagcaga
acggtgaaaagacagaggagactcaagctgaggccaccgaggagaagaatgagactgagg
ctgaagaggccgataaggataaggcagtcgagaacggagaagcaaaggacaccaacggca
acgatcgtaagcgtgtgtccagcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGACGTTGCCGAGACTGTTGTCGC 208 263 17 Antisense
GCCGAGACTGTTGTCGCTCAAGAGC 498 283 25 Antisense
GTCGCTCAAGAGCCAGAGGTTGTCG 232 473 37 Antisense
GAGGTTGTCGAACCAGTCGAGGAGA 574 401 52 Antisense
GGAGAAGCCAACCGAGACTGGATCG 704 519 72 Antisense
GAGACTGGATCGGACGATGTCGTTG 461 389 85 Antisense
GGACGATGTCGTTGTGATTGATGAG 656 523 96 Antisense
AGAGGAGACTCAAGCTGAGGCCACC 66 69 150 Antisense
CAAGCTGAGGCCACCGAGGAGAAGA 292 185 160 Antisense
GCAAAGGACACCAACGGCAACGATC 659 317 238 Antisense
CGATCGTAAGCGTGTGTCCAGCGCC 463 249 258 Antisense
Sequence Source Affymetrix Proprietary Database