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[187210_at]

Description ZK632.10 /REP_DB=WormBase Gene ID /WP=CE02385 /TR=SW:P34655 /GB=CAA80190.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 69      6grp_total > 85      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1190
1 2 3 4 range
A 1525.2
(-3)
P 		1795.2
(-1.6)
P 		1761.3
(-1.8)
P 		2715.5
(3)
P 		1190
B 1764
(-1.9)
P 		1583.4
(-3)
P 		2107.9
(0.1)
P 		2583.6
(3)
P 		1000
C 1736.7
(-2.2)
P 		1642.8
(-3)
P 		1660.5
(-2.9)
P 		2350.9
(3)
P 		708
avr 1675.3
(-3) 		1673.8
(-3) 		1843.2
(-1.8) 		2550
(3) 		876

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2469
1 2 3 4 5 6 range
A 1800.4
(-2.2)
P 		1620.7
(-3)
P 		1994.9
(-1.3)
P 		2421.1
(0.7)
P 		2934.7
(3)
P 		2802.8
(2.4)
P 		1314
B 1921.1
(-1.8)
P 		1599.6
(-3)
P 		2332.7
(-0.3)
P 		2485.8
(0.3)
P 		3121.7
(2.6)
P 		3216.7
(3)
P 		1617
C 1873.7
(-2)
P 		1462.1
(-3)
P 		1940.8
(-1.8)
P 		2966.7
(0.7)
P 		2820
(0.3)
P 		3931
(3)
P 		2469
avr 1865.1
(-2) 		1560.8
(-3) 		2089.5
(-1.2) 		2624.5
(0.6) 		2958.8
(1.8) 		3316.8
(3) 		1756
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 555.3
(3)
P 		389.7
(-3)
P 		460.4
(-0.4)
P 		397.5
(-2.7)
P 		166
B 562.5
(3)
P 		391.1
(-3)
P 		488.5
(0.4)
P 		550.6
(2.6)
P 		171
C 574.9
(2.9)
P 		472.3
(-0.5)
P 		578.7
(3)
P 		396.4
(-3)
P 		182
avr 564.2
(3) 		417.7
(-3) 		509.2
(0.7) 		448.2
(-1.8) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 984
1 2 3 4 5 6 range
A 331.9
(-3)
P 		576.4
(-0.4)
P 		434.4
(-1.9)
P 		614
(0.1)
P 		885.6
(3)
P 		682.4
(0.8)
P 		554
B 668.4
(-1.9)
P 		532.4
(-3)
P 		566.5
(-2.7)
P 		658.4
(-2)
P 		1268.3
(3)
P 		1199.5
(2.4)
P 		736
C 694.5
(-1.3)
P 		446.1
(-3)
P 		494
(-2.7)
P 		596.6
(-2)
P 		912.5
(0.2)
P 		1315.9
(3)
P 		870
avr 564.9
(-2.3) 		518.3
(-2.8) 		498.3
(-3) 		623
(-1.7) 		1022.1
(2.5) 		1065.9
(3) 		568
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6613
Sequence Type Exemplar sequence
Representative Public ID ZK632.10 NCBI
Target Description ZK632.10 /REP_DB=WormBase Gene ID /WP=CE02385 /TR=SW:P34655 /GB=CAA80190.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066780 NCBI Caenorhabditis elegans ZK632.10 (ZK632.10) mRNA, complete cds. 11/11 None
GENEFINDER00000031483 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9824052:9827045:-1 10/11 None
ZK632.10 ENSEMBL cdna:known chromosome:CEL140:III:9826327:9827072:-1 gene:ZK632.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9826537-9827041(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK632.10
Entrez Gene 176395 Entrez gene
SwissProt P34655 EMBL-EBI
WormBase CE02385 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80188 Hypothetical protein ZK632.13 [Caenorhabditis elegans] ref|NP_499179.1| abnormal cell LINeage family member (lin-52) [Caenorhabditis elegans] gb|AAP85302.1| LIN-52 [Caenorhabditis elegans] sp|Q10120|LIN52_CAEEL Protein lin-52 (Abnormal cell lineage protein 52) 6.0E-88
blast CAE65119 Hypothetical protein CBG09984 [Caenorhabditis briggsae] 6.0E-55
blast CAA80190 Hypothetical protein ZK632.10 [Caenorhabditis elegans] ref|NP_499181.1| ZK632.10 [Caenorhabditis elegans] sp|P34655|YOT0_CAEEL Hypothetical UPF0057 protein ZK632.10 in chromosome III 2.0E-30
blast CAE65117 Hypothetical protein CBG09982 [Caenorhabditis briggsae] 1.0E-25
blast A88567 protein ZK632.9 [imported] - Caenorhabditis elegans 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 4.0E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499181.1 2 5-24,29-51
ZK632.10 2 5-24,29-51
GENEFINDER00000031483 2 4-23,28-50
Sequence
Target Sequence 
>C. ELEGANS:187210_AT
caatcgctgtgcttctggatgttggatgcaactgtgacctcctcatcaacattcttctca
cctgtctcgggatcatcccaggaatcattcacgcgtggtacatcatcctttgcaaggaga
agactgtcgttcagaacatatacgtgcagactaatgaccacggaaccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCGCTGTGCTTCTGGATGTTGG 636 181 56 Antisense
CGCTGTGCTTCTGGATGTTGGATGC 461 253 60 Antisense
TGTTGGATGCAACTGTGACCTCCTC 706 563 75 Antisense
ACCTGTCTCGGGATCATCCCAGGAA 99 89 115 Antisense
GGATCATCCCAGGAATCATTCACGC 3 513 125 Antisense
ATCCCAGGAATCATTCACGCGTGGT 55 39 130 Antisense
CATTCACGCGTGGTACATCATCCTT 128 217 141 Antisense
CGTGGTACATCATCCTTTGCAAGGA 467 245 149 Antisense
AGGAGAAGACTGTCGTTCAGAACAT 627 55 170 Antisense
GTTCAGAACATATACGTGCAGACTA 269 445 184 Antisense
GCAGACTAATGACCACGGAACCGCT 395 313 201 Antisense
Sequence Source Affymetrix Proprietary Database