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[187209_at]

Description C02C2.5 /REP_DB=WormBase Gene ID /WP=CE00031 /TR=SW:P34273 /GB=AAA27908.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      6grp_highest_nonorm > 70      6grp_total > 11      4grp_total > 38      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 239
(3)
P 		95.1
(-3)
A 		100.9
(-2.8)
A 		95.3
(-3)
M 		144
B 305.7
(3)
P 		139.2
(-0.9)
A 		52.4
(-3)
A 		137.6
(-1)
P 		253
C 261.2
(3)
P 		145.3
(-1.2)
A 		94.3
(-3)
A 		188.7
(0.4)
P 		167
avr 268.6
(3) 		126.5
(-1.6) 		82.5
(-3) 		140.5
(-1.1) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 275.8
(1.6)
P 		317.5
(2.8)
P 		325.8
(3)
P 		251.3
(1)
P 		170.9
(-1.2)
P 		104.7
(-3)
P 		221
B 329
(1.3)
P 		423.8
(3)
P 		317.9
(1.1)
P 		207.9
(-0.8)
P 		199.6
(-1)
P 		83.4
(-3)
P 		340
C 209.6
(-1.4)
P 		448.8
(3)
P 		162.4
(-2.3)
P 		239.7
(-0.8)
P 		122.5
(-3)
P 		157.4
(-2.4)
P 		326
avr 271.5
(0.3) 		396.7
(3) 		268.7
(0.3) 		233
(-0.5) 		164.3
(-2) 		115.2
(-3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 87
(3)
P 		20.6
(-2.5)
A 		26.4
(-2)
A 		13.9
(-3)
M 		73
B 97.5
(3)
P 		34.4
(-1.4)
A 		12.1
(-3)
A 		29.3
(-1.8)
P 		85
C 86.5
(3)
P 		41.8
(-1.9)
A 		32.9
(-2.9)
A 		31.8
(-3)
P 		55
avr 90.3
(3) 		32.3
(-2.2) 		23.8
(-3) 		25
(-2.9) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 50.8
(-1.3)
P 		112.9
(3)
P 		70.9
(0.1)
P 		63.7
(-0.4)
P 		51.6
(-1.2)
P 		25.5
(-3)
P 		87
B 114.5
(1.5)
P 		141.1
(3)
P 		77.2
(-0.5)
P 		55.1
(-1.7)
P 		81.1
(-0.3)
P 		31.1
(-3)
P 		110
C 77.7
(-0.7)
P 		136.9
(3)
P 		41.3
(-2.9)
P 		48.2
(-2.5)
P 		39.6
(-3)
P 		52.7
(-2.2)
P 		97
avr 81
(-0.2) 		130.3
(3) 		63.1
(-1.3) 		55.7
(-1.8) 		57.4
(-1.7) 		36.4
(-3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6364
Sequence Type Exemplar sequence
Representative Public ID C02C2.5 NCBI
Target Description C02C2.5 /REP_DB=WormBase Gene ID /WP=CE00031 /TR=SW:P34273 /GB=AAA27908.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066311(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066311 NCBI Caenorhabditis elegans C02C2.5 (C02C2.5) mRNA, complete cds. 10/11 None
SNAP00000005403 ENSEMBL cdna:SNAP chromosome:CEL140:III:7877189:7878762:-1 10/11 None
GENEFINDER00000005406 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7877189:7878762:-1 10/11 None
C02C2.5 ENSEMBL cdna:known chromosome:CEL140:III:7877169:7878762:-1 gene:C02C2.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7877139-7878760(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02C2.5
Entrez Gene 182108 Entrez gene
SwissProt P34273 EMBL-EBI
WormBase CE34519 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585746_AT similar to chromosome 6 open reading frame 71 cfa
CANINE_2:CFA.13139.1.A1_AT similar to chromosome 6 open reading frame 71 cfa
CANINE_2:CFA.18404.1.S1_S_AT similar to chromosome 6 open reading frame 71 cfa
CANINE_2:CFAAFFX.1559.1.S1_AT similar to chromosome 6 open reading frame 71 cfa
DROSOPHILA_2:1638969_AT dm
DROSGENOME1:148549_AT dm
CHICKEN:GGAAFFX.23884.1.S1_AT similar to iodotyrosine dehalogenase 1 protein gga
HU35KSUBA:HUM_ALU_AT chromosome 6 open reading frame 71 hs
HU35KSUBB:HUM_ALU_AT chromosome 6 open reading frame 71 hs
HU35KSUBC:HUM_ALU_AT chromosome 6 open reading frame 71 hs
HU35KSUBD:HUM_ALU_AT chromosome 6 open reading frame 71 hs
HUGENEFL:HUM_ALU_AT chromosome 6 open reading frame 71 hs
HC-G110:HUM_ALU_AT chromosome 6 open reading frame 71 hs
HU35KSUBB:RC_W90018_F_AT chromosome 6 open reading frame 71 hs
HU35KSUBD:RC_H78003_F_AT chromosome 6 open reading frame 71 hs
U133_X3P:HS.15266.0.A1_3P_AT chromosome 6 open reading frame 71 hs
HG-U133_PLUS_2:231070_AT chromosome 6 open reading frame 71 hs
HG-U133B:231070_AT chromosome 6 open reading frame 71 hs
HG-U95C:60008_AT chromosome 6 open reading frame 71 hs
MU11KSUBA:AA212774_S_AT RIKEN cDNA 0610009A07 gene mm
MG-U74AV2:103714_AT RIKEN cDNA 0610009A07 gene mm
MOE430A:1451547_AT RIKEN cDNA 0610009A07 gene mm
MOUSE430A_2:1451547_AT RIKEN cDNA 0610009A07 gene mm
MOUSE430_2:1451547_AT RIKEN cDNA 0610009A07 gene mm
RAE230B:1384628_AT similar to RIKEN cDNA 0610009A07 (predicted) rn
RAT230_2:1384628_AT similar to RIKEN cDNA 0610009A07 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27908 Hypothetical protein C02C2.5 [Caenorhabditis elegans] ref|NP_498712.2| C02C2.5 [Caenorhabditis elegans] sp|P34273|YKH5_CAEEL Hypothetical protein C02C2.5 in chromosome III 0.0
blast CAE66889 Hypothetical protein CBG12270 [Caenorhabditis briggsae] 1.0E-176
blast AAH78565 MGC85450 protein [Xenopus laevis] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR000415 EMBL-EBI Nitroreductase 2.6E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498712.2 1 60-82
C02C2.5 1 60-82
SNAP00000005403 1 60-82
GENEFINDER00000005406 1 60-82
Sequence
Target Sequence 
>C. ELEGANS:187209_AT
gaagttgtcgacagttcagctcaagggatgtaccattaaaagttattcaaaatttattaa
aaacggctggcacatctccgagtgttggaaatcttcaaccatggacgttttgtgttgttt
caagtgattcaattaaaacaatgatcaggaaaatcttagaagcggacgaacgggataact
atgtctctagaaaaaaaggagcttcttgggtagttgatgtatcacaattacaagacacgt
ggcggaggccatacattacagatgctccatatctattaattgtttgtcatgagatatttc
gtgacgtgcatagtaaaacagaacgggtattccactataatcaaataagcacatcaattg
ctgttggcatccttttggctgcaattcagaatgttggattgagtactgtagtgacgtcac
cgttgaatgcaggacccgatatttcaagaatattgaggaggcctgagaatgaaaatacta
ctgctacttcctcttggttatgcgtcagaagacgtgcttgttccagatctcaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTGTCGACAGTTCAGCTCAAG 675 337 476 Antisense
GCTGGCACATCTCCGAGTGTTGGAA 79 295 541 Antisense
ACCATGGACGTTTTGTGTTGTTTCA 192 87 573 Antisense
ATTACAAGACACGTGGCGGAGGCCA 654 5 702 Antisense
GAGGCCATACATTACAGATGCTCCA 36 407 720 Antisense
GTTGGCATCCTTTTGGCTGCAATTC 621 435 838 Antisense
GAGTACTGTAGTGACGTCACCGTTG 415 397 876 Antisense
TCACCGTTGAATGCAGGACCCGATA 608 625 892 Antisense
GAAAATACTACTGCTACTTCCTCTT 144 331 946 Antisense
TACTTCCTCTTGGTTATGCGTCAGA 657 643 960 Antisense
ACGTGCTTGTTCCAGATCTCAAAAG 339 95 987 Antisense
Sequence Source Affymetrix Proprietary Database