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[187208_at]

Description K07B1.2 /REP_DB=WormBase Gene ID /WP=CE11878 /TR=SW:O01884 /GB=AAB54238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 76      6grp_total > 16      4grp_total > 53      6grp_highest_sub > Cu      6grp_cgc > 24      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 878
1 2 3 4 range
A 1691.5
(3)
P 		1308.3
(-0)
P 		1281.3
(-0.2)
P 		933.5
(-3)
P 		758
B 1664.1
(3)
P 		1415.6
(0.9)
P 		1230.7
(-0.7)
P 		970.2
(-3)
P 		694
C 1709.9
(3)
P 		1290.2
(0.1)
P 		1409.7
(0.9)
P 		832.4
(-3)
P 		878
avr 1688.5
(3) 		1338
(0.3) 		1307.2
(0.1) 		912
(-3) 		777

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 1308
(2.4)
P 		1346.1
(3)
P 		1029.7
(-2.1)
P 		1244.3
(1.4)
P 		973.9
(-3)
P 		1303.1
(2.3)
P 		372
B 1530.6
(3)
P 		1238.9
(-0.7)
P 		1122.8
(-2.2)
P 		1186.3
(-1.4)
P 		1103.3
(-2.5)
P 		1061.8
(-3)
P 		469
C 1411.5
(3)
P 		1254.2
(1.2)
P 		1295.7
(1.7)
P 		885.5
(-3)
P 		1043
(-1.2)
P 		1075.5
(-0.8)
P 		526
avr 1416.7
(3) 		1279.7
(0.8) 		1149.4
(-1.3) 		1105.4
(-2) 		1040.1
(-3) 		1146.8
(-1.3) 		377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 615.9
(3)
P 		284
(-1.2)
P 		334.9
(-0.5)
P 		136.6
(-3)
P 		479
B 530.7
(3)
P 		349.6
(-0.4)
P 		285.2
(-1.5)
P 		206.7
(-3)
P 		324
C 566
(3)
P 		370.9
(0.2)
P 		491.3
(1.9)
P 		140.4
(-3)
P 		426
avr 570.9
(3) 		334.8
(-0.5) 		370.5
(0.1) 		161.2
(-3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 241.1
(-2.6)
P 		478.7
(3)
P 		224.2
(-3)
P 		315.6
(-0.8)
P 		293.9
(-1.4)
P 		317.3
(-0.8)
P 		255
B 532.6
(3)
P 		412.4
(0.2)
P 		272.6
(-3)
P 		314.2
(-2)
P 		448.3
(1.1)
P 		395.9
(-0.2)
P 		260
C 523.2
(3)
P 		382.7
(0.6)
P 		329.8
(-0.4)
P 		178.1
(-3)
P 		337.5
(-0.2)
P 		360
(0.2)
P 		345
avr 432.3
(3) 		424.6
(2.7) 		275.5
(-2.8) 		269.3
(-3) 		359.9
(0.3) 		357.7
(0.3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11332
Sequence Type Exemplar sequence
Representative Public ID K07B1.2 NCBI
Target Description K07B1.2 /REP_DB=WormBase Gene ID /WP=CE11878 /TR=SW:O01884 /GB=AAB54238.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073014 NCBI Caenorhabditis elegans COenzyme Q (ubiquinone) biosynthesis family member (coq-6) (coq-6) mRNA, complete cds. 11/11 None
SNAP00000012086 ENSEMBL cdna:SNAP chromosome:CEL140:V:9339346:9341427:1 11/11 None
K07B1.2 ENSEMBL cdna:known chromosome:CEL140:V:9339346:9341442:1 gene:K07B1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012093 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9339345-9341427(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol coq-6
Ensembl K07B1.2
Entrez Gene 179316 Entrez gene
SwissProt O01884 EMBL-EBI
WormBase CE30815 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257240_AT monooxygenase family protein at
CANINE:1606015_AT similar to Ubiquinone biosynthesis monooxgenase COQ6 cfa
CANINE_2:CFA.2782.1.S1_S_AT similar to Ubiquinone biosynthesis monooxgenase COQ6 cfa
CANINE_2:CFA.2782.2.A1_A_AT similar to Ubiquinone biosynthesis monooxgenase COQ6 cfa
DROSOPHILA_2:1641134_AT dm
DROSGENOME1:152875_AT dm
CHICKEN:GGAAFFX.6414.1.S1_AT similar to Coq6 protein gga
HG-U133_PLUS_2:218760_AT coenzyme Q6 homolog (yeast) hs
HG-U133A:218760_AT coenzyme Q6 homolog (yeast) hs
HG-U133A_2:218760_AT coenzyme Q6 homolog (yeast) hs
HU35KSUBA:AA215997_S_AT coenzyme Q6 homolog (yeast) hs
HU35KSUBA:RC_AA431317_AT coenzyme Q6 homolog (yeast) hs
U133_X3P:G7705593_3P_AT coenzyme Q6 homolog (yeast) hs
HG-U95B:56535_AT coenzyme Q6 homolog (yeast) hs
HG-U95C:63705_F_AT coenzyme Q6 homolog (yeast) hs
HG-U95C:63906_F_AT coenzyme Q6 homolog (yeast) hs
HG-U133_PLUS_2:226594_AT Coenzyme Q6 homolog (yeast) hs
HG-U133B:226594_AT Coenzyme Q6 homolog (yeast) hs
HU35KSUBB:RC_W86375_S_AT Coenzyme Q6 homolog (yeast) hs
U133_X3P:HS.285290.1.A1_3P_AT Coenzyme Q6 homolog (yeast) hs
HG-U95C:48904_AT Coenzyme Q6 homolog (yeast) hs
HG-U133_PLUS_2:231676_S_AT Coenzyme Q6 homolog (yeast) hs
HG-U133B:231676_S_AT Coenzyme Q6 homolog (yeast) hs
U133_X3P:HS.285290.0.A1_3P_AT Coenzyme Q6 homolog (yeast) hs
MG-U74BV2:112361_AT coenzyme Q6 homolog (yeast) mm
MOE430A:1426902_AT coenzyme Q6 homolog (yeast) mm
MOUSE430A_2:1426902_AT coenzyme Q6 homolog (yeast) mm
MOUSE430_2:1426902_AT coenzyme Q6 homolog (yeast) mm
MG-U74BV2:165401_R_AT Coenzyme Q6 homolog (yeast), mRNA (cDNA clone IMAGE:5126082) mm
MG-U74CV2:169152_R_AT Coenzyme Q6 homolog (yeast), mRNA (cDNA clone IMAGE:5126082) mm
MG-U74CV2:170810_AT Coenzyme Q6 homolog (yeast), mRNA (cDNA clone IMAGE:5126082) mm
MU19KSUBA:TC18601_AT Coenzyme Q6 homolog (yeast), mRNA (cDNA clone IMAGE:5126082) mm
MU19KSUBC:TC39622_AT Coenzyme Q6 homolog (yeast), mRNA (cDNA clone IMAGE:5126082) mm
RG-U34B:RC_AI058337_AT coenzyme Q6 homolog (yeast) (predicted) rn
RG-U34B:RC_AA956185_AT coenzyme Q6 homolog (yeast) (predicted) rn
RG-U34B:RC_AA956185_G_AT coenzyme Q6 homolog (yeast) (predicted) rn
RAE230A:1372753_AT coenzyme Q6 homolog (yeast) (predicted) rn
RAT230_2:1372753_AT coenzyme Q6 homolog (yeast) (predicted) rn
RAE230A:1372774_AT Coenzyme Q6 homolog (yeast) (predicted) rn
RAT230_2:1372774_AT Coenzyme Q6 homolog (yeast) (predicted) rn
RAE230B:1382544_AT Coenzyme Q6 homolog (yeast) (predicted) rn
RAT230_2:1382544_AT Coenzyme Q6 homolog (yeast) (predicted) rn
RG-U34B:RC_AI058746_AT Coenzyme Q6 homolog (yeast) (predicted) rn
RG-U34C:RC_AI170570_AT Coenzyme Q6 homolog (yeast) (predicted) rn
RG-U34C:RC_AI177341_AT Coenzyme Q6 homolog (yeast) (predicted) rn
YEAST_2:1779699_AT Putative flavin-dependent monooxygenase, involved in ubiquinone (Coenzyme Q) biosynthesis; located on the matrix side of the mitochondrial inner membrane Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6725 aromatic compound metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54238 Coenzyme q (ubiquinone) biosynthesis protein 6 [Caenorhabditis elegans] ref|NP_505415.2| COenzyme Q (ubiquinone) biosynthesis family member (coq-6) [Caenorhabditis elegans] sp|O01884|COQ6_CAEEL Probable ubiquinone biosynthesis monooxgenase coq-6 0.0
blast CAE72156 Hypothetical protein CBG19254 [Caenorhabditis briggsae] 0.0
blast AAH76897 Coenzyme Q6 homolog [Xenopus tropicalis] ref|NP_001006829.1| coenzyme Q6 homolog [Xenopus tropicalis] 2.0E-88
blast AAH76897 Coenzyme Q6 homolog [Xenopus tropicalis] ref|NP_001006829.1| coenzyme Q6 homolog [Xenopus tropicalis] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000733 EMBL-EBI Flavoprotein monooxygenase 3.3E-19
Pfam IPR000733 EMBL-EBI Flavoprotein monooxygenase 3.3E-19
Sequence
Target Sequence 
>C. ELEGANS:187208_AT
tactgtgtccggtttgacgtggtcaacaagtcccgaagaagctcaacgattgaaacaact
tccttctgatcaatttgttgatgaactgaattccgcattgttttcacaaaacaatcaaat
tcctttggtgaatcagaccattttcgcactgaatcgtatgaatcctttccgaacggaaac
ttttgggaggaaagctgaaggaacaactccaccacatgtgattactgttcaggacaaaag
tcgagcctcatttcctcttggtttcggaaatgctcatagttatatcaccacacgatgcgc
tttgattggagatgctgctcacagaatgcatccacttgccgggcaaggagtaaaccttgg
ctggagtgatgtgcaaattctagataaagtactcggtgacgctgtgcgtgaaggtgcaga
catcggaagcataacatatctgcgagaatatgattcggcggcacaaaaacacaatcttcc
tgtaatggtgtctgttgatctgctcaatcgtctctaccgtaccgatgctccagctattgt
tgccgcaagagcttttggcctaaatgcattcaattctttaggacctgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTGTCCGGTTTGACGTGGTCA 81 647 786 Antisense
CAGACCATTTTCGCACTGAATCGTA 623 205 919 Antisense
GAACAACTCCACCACATGTGATTAC 163 353 986 Antisense
CAAAAGTCGAGCCTCATTTCCTCTT 246 191 1020 Antisense
TATATCACCACACGATGCGCTTTGA 527 661 1066 Antisense
TCACAGAATGCATCCACTTGCCGGG 709 627 1104 Antisense
TAAAGTACTCGGTGACGCTGTGCGT 288 639 1170 Antisense
GTCTGTTGATCTGCTCAATCGTCTC 559 471 1275 Antisense
GTACCGATGCTCCAGCTATTGTTGC 3 459 1304 Antisense
GTTGCCGCAAGAGCTTTTGGCCTAA 621 439 1324 Antisense
GCATTCAATTCTTTAGGACCTGTCA 268 307 1351 Antisense
Sequence Source Affymetrix Proprietary Database