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[187203_at]

Description C06G4.4 /REP_DB=WormBase Gene ID /WP=CE00549 /TR=SW:P34310 /GB=AAA27942.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 12.4
(-2.3)
A 		4.7
(-3)
A 		14.1
(-2.1)
A 		68.9
(3)
A 		64
B 9
(-1.6)
A 		4
(-3)
A 		11.6
(-0.9)
A 		26.2
(3)
A 		22
C 8
(-2.4)
A 		3.1
(-2.8)
A 		1.3
(-3)
A 		68.1
(3)
A 		67
avr 9.8
(-2.3) 		3.9
(-3) 		9
(-2.4) 		54.4
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 33.1
(-2.5)
A 		21.1
(-3)
A 		45.5
(-2)
A 		26.5
(-2.8)
A 		99.1
(0.2)
P 		166.9
(3)
P 		146
B 22.9
(-2)
A 		16.2
(-2.4)
A 		4.8
(-3)
A 		47.5
(-0.8)
A 		66.6
(0.2)
P 		119.1
(3)
P 		114
C 3.4
(-3)
A 		32.6
(-1.9)
A 		42.4
(-1.5)
A 		2.7
(-3)
A 		96.1
(0.5)
P 		161.7
(3)
P 		159
avr 19.8
(-3) 		23.3
(-2.8) 		30.9
(-2.5) 		25.6
(-2.7) 		87.3
(0.1) 		149.2
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.5
(-0.7)
A 		1
(-3)
A 		3.7
(-1.2)
A 		10.1
(3)
A 		9
B 2.9
(-0.5)
A 		1
(-3)
A 		2.7
(-0.8)
A 		5.6
(3)
A 		5
C 2.7
(-1.8)
A 		0.9
(-2.7)
A 		0.4
(-3)
A 		11.5
(3)
A 		11
avr 3.4
(-1.2) 		1
(-3) 		2.3
(-2) 		9.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.1
(-3)
A 		7.5
(-2.8)
A 		9.9
(-2.3)
A 		6.7
(-2.9)
A 		29.9
(1.1)
P 		40.6
(3)
P 		35
B 8
(-2.1)
A 		5.4
(-2.4)
A 		1.2
(-3)
A 		12.6
(-1.4)
A 		27.1
(0.6)
P 		44.4
(3)
P 		43
C 1.2
(-2.9)
A 		9.9
(-1.9)
A 		10.8
(-1.8)
A 		0.5
(-3)
A 		31.1
(0.4)
P 		54.1
(3)
P 		54
avr 5.1
(-3) 		7.6
(-2.6) 		7.3
(-2.7) 		6.6
(-2.8) 		29.4
(0.5) 		46.4
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7428
Sequence Type Exemplar sequence
Representative Public ID C06G4.4 NCBI
Target Description C06G4.4 /REP_DB=WormBase Gene ID /WP=CE00549 /TR=SW:P34310 /GB=AAA27942.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066338 NCBI Caenorhabditis elegans C06G4.4 (C06G4.4) mRNA, complete cds. 11/11 None
SNAP00000040328 ENSEMBL cdna:SNAP chromosome:CEL140:III:7977174:7977617:-1 11/11 None
GENEFINDER00000040337 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7977264:7977617:-1 9/11 None
C06G4.4 ENSEMBL cdna:known chromosome:CEL140:III:7977174:7977617:-1 gene:C06G4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7977171-7977615(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G4.4
Entrez Gene 182344 Entrez gene
SwissProt P34310 EMBL-EBI
WormBase CE00549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27942 Hypothetical protein C06G4.4 [Caenorhabditis elegans] ref|NP_498739.1| C06G4.4 [Caenorhabditis elegans] sp|P34310|YKR4_CAEEL Hypothetical protein C06G4.4 in chromosome III 2.0E-48
blast AAA27942 Hypothetical protein C06G4.4 [Caenorhabditis elegans] ref|NP_498739.1| C06G4.4 [Caenorhabditis elegans] sp|P34310|YKR4_CAEEL Hypothetical protein C06G4.4 in chromosome III 2.0E-38
blast CAE75036 Hypothetical protein CBG22944 [Caenorhabditis briggsae] emb|CAE56718.1| Hypothetical protein CBG24505 [Caenorhabditis briggsae] 8.0E-20
blast CAE75036 Hypothetical protein CBG22944 [Caenorhabditis briggsae] emb|CAE56718.1| Hypothetical protein CBG24505 [Caenorhabditis briggsae] 6.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498739.1 1 103-125
C06G4.4 1 103-125
SNAP00000040328 1 103-125
Sequence
Target Sequence 
>C. ELEGANS:187203_AT
agcggtggcaaaacagcgacgcattaagaaacttcgcaaaatgaagattaaagatagagc
tggtgacgtggttgtcagtgatatttctgacgttgaagttgttggaaatggtgatgaaga
atcacaggatgattggttgaatgatcttctgaagagtgatggtgatggtggaaaagccgg
accggttgatccttcgcatccaatggaaaccacaacaactgatcattcttcacaaaacac
tctggcatcaaagatctgtgcattcacttatgataactcggctcttcttggcgttggaat
cgtcacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGGTGGCAAAACAGCGACGCATT 609 81 60 Antisense
GAGCTGGTGACGTGGTTGTCAGTGA 173 387 116 Antisense
GATTGGTTGAATGATCTTCTGAAGA 418 435 190 Antisense
GATGGTGGAAAAGCCGGACCGGTTG 146 403 223 Antisense
GATCCTTCGCATCCAATGGAAACCA 129 417 247 Antisense
CCACAACAACTGATCATTCTTCACA 306 275 269 Antisense
ATTCTTCACAAAACACTCTGGCATC 561 11 284 Antisense
AACACTCTGGCATCAAAGATCTGTG 598 135 295 Antisense
AAGATCTGTGCATTCACTTATGATA 25 155 310 Antisense
TTATGATAACTCGGCTCTTCTTGGC 34 681 327 Antisense
TTCTTGGCGTTGGAATCGTCACGGT 243 687 344 Antisense
Sequence Source Affymetrix Proprietary Database