[Home] | [Total List]

[187202_s_at]

Description EEED8.8 /REP_DB=WormBase Gene ID /WP=CE27911 /TR=SW:Q09297 /GB=AAC46768.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 20      4grp_high_8_8 > 23      6grp_highest_nonorm > 71      6grp_total > 55      4grp_total > 24      6grp_cgc > 55      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 368.5
(-3)
P 		417
(-1.4)
P 		428.4
(-1)
P 		551
(3)
P 		183
B 345.2
(-3)
P 		360.9
(-2.4)
P 		431.8
(0.1)
P 		514.7
(3)
P 		170
C 336
(-2.3)
P 		306.5
(-3)
P 		574.3
(3)
P 		476.2
(0.8)
P 		268
avr 349.9
(-3) 		361.5
(-2.6) 		478.2
(1.7) 		514
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 219.8
(-3)
P 		347.5
(0.2)
P 		418
(2)
P 		455.6
(3)
P 		252
(-2.2)
P 		367.7
(0.8)
P 		236
B 354.5
(0.8)
P 		382.5
(3)
P 		349.7
(0.4)
P 		366.8
(1.8)
P 		307.8
(-2.9)
P 		306.3
(-3)
P 		76
C 329.8
(0.6)
P 		370.2
(2.3)
P 		332.9
(0.7)
P 		242.8
(-3)
P 		264.4
(-2.1)
P 		388.4
(3)
P 		146
avr 301.4
(-1.3) 		366.7
(3) 		366.9
(3) 		355.1
(2.2) 		274.7
(-3) 		354.1
(2.2) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 134.2
(3)
P 		90.5
(-1.9)
P 		112
(0.5)
P 		80.7
(-3)
P 		54
B 110.1
(3)
P 		89.1
(-3)
P 		100.1
(0.1)
P 		109.7
(2.9)
P 		21
C 111.2
(-1.5)
P 		88.1
(-2.6)
P 		200.2
(3)
P 		80.3
(-3)
P 		120
avr 118.5
(0.6) 		89.2
(-3) 		137.4
(3) 		90.2
(-2.9) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 40.5
(-3)
P 		123.6
(3)
P 		91
(0.6)
P 		115.6
(2.4)
P 		76
(-0.4)
P 		89.5
(0.5)
P 		83
B 123.3
(2.4)
P 		127.3
(3)
P 		84.9
(-3)
P 		97.1
(-1.3)
P 		125.1
(2.7)
P 		114.2
(1.1)
P 		42
C 122.2
(2.4)
P 		113
(1.7)
P 		84.7
(-0.3)
P 		48.8
(-3)
P 		85.6
(-0.3)
P 		130
(3)
P 		81
avr 95.3
(-1.5) 		121.3
(3) 		86.9
(-3) 		87.2
(-2.9) 		95.6
(-1.5) 		111.2
(1.2) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187202_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4539
Sequence Type Exemplar sequence
Representative Public ID EEED8.8 NCBI
Target Description EEED8.8 /REP_DB=WormBase Gene ID /WP=CE27911 /TR=SW:Q09297 /GB=AAC46768.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062614 NCBI Caenorhabditis elegans NuDiX family member (ndx-6) (ndx-6) mRNA, complete cds. 11/11 None
SNAP00000023166 ENSEMBL cdna:SNAP chromosome:CEL140:II:5388887:5389689:-1 11/11 None
GENEFINDER00000023183 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5388887:5395649:-1 11/11 None
EEED8.8 ENSEMBL cdna:known chromosome:CEL140:II:5388887:5389827:-1 gene:EEED8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5388884-5389687(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ndx-6
Ensembl EEED8.8
Entrez Gene 173916 Entrez gene
SwissProt Q09297 EMBL-EBI
WormBase CE27911 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604469_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 9 cfa
CANINE:1588423_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 9 cfa
CANINE_2:CFA.1573.1.S1_A_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 9 cfa
CANINE_2:CFA.1573.1.S1_S_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 9 cfa
CANINE_2:CFA.1573.2.S1_S_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 9 cfa
DROSOPHILA_2:1624332_S_AT dm
DROSGENOME1:148904_S_AT dm
DROSGENOME1:142706_AT dm
CHICKEN:GGA.17517.1.S1_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 gga
HG-U133_PLUS_2:218375_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
HG-U133A:218375_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
HG-U133A_2:218375_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
U133_X3P:G13129009_3P_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
HG-U95E:78421_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
HG-U133_PLUS_2:241489_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
HG-U133B:241489_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
HG-U95D:80571_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
U133_X3P:HS.149500.0.A1_3P_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9 hs
MG-U74AV2:98099_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 mm
MOE430A:1428164_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 mm
MOUSE430A_2:1428164_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 mm
MOUSE430_2:1428164_AT nudix (nucleoside diphosphate linked moiety X)-type motif 9 mm
MOUSE430_2:1441633_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9, mRNA (cDNA clone MGC:36314 IMAGE:5068809) mm
MOE430B:1441633_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9, mRNA (cDNA clone MGC:36314 IMAGE:5068809) mm
MG-U74CV2:170826_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9, mRNA (cDNA clone MGC:36314 IMAGE:5068809) mm
MU19KSUBB:TC31159_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9, mRNA (cDNA clone MGC:36314 IMAGE:5068809) mm
MU19KSUBB:TC31159_G_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 9, mRNA (cDNA clone MGC:36314 IMAGE:5068809) mm
RG-U34C:RC_AI179709_AT nudix -type motif 9 rn
RG-U34C:RC_AI104864_G_AT nudix -type motif 9 rn
RG-U34C:RC_AI105432_AT nudix -type motif 9 rn
RG-U34C:RC_AI104864_AT nudix -type motif 9 rn
RAE230A:1373840_AT nudix -type motif 9 rn
RAT230_2:1373840_AT nudix -type motif 9 rn
Protein Similarities
Method ID Description E-Value
blast CAE59093 Hypothetical protein CBG02385 [Caenorhabditis briggsae] 0.0
blast AAK93845 Hypothetical protein EEED8.9 [Caenorhabditis elegans] ref|NP_495017.1| PINK (PTEN-induced kinase) homolog family member (pink-1) [Caenorhabditis elegans] sp|Q09298|YQO9_CAEEL Putative serine/threonine-protein kinase EEED8.9 0.0
blast AAK93844 Hypothetical protein EEED8.16 [Caenorhabditis elegans] ref|NP_495016.1| EEED8.16 [Caenorhabditis elegans] sp|Q95QN6|YQOE_CAEEL Hypothetical RING finger protein EEED8.16 in chromosome II 0.0
blast AAC46768 Nudix family protein 6 [Caenorhabditis elegans] ref|NP_495015.1| NuDiX family member (ndx-6) [Caenorhabditis elegans] sp|Q09297|NDX6_CAEEL Putative nudix hydrolase 1.0E-145
blast T15918 hypothetical protein EEED8.8 - Caenorhabditis elegans 1.0E-121
blast CAE59092 Hypothetical protein CBG02384 [Caenorhabditis briggsae] 1.0E-109
blast T15918 hypothetical protein EEED8.8 - Caenorhabditis elegans 2.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 6.7E-20
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 6.7E-20
Pfam IPR001607 EMBL-EBI Zn-finger in ubiquitin thiolesterase 9.8E-35
Pfam IPR000719 EMBL-EBI Protein kinase 0.0029
Pfam IPR000719 EMBL-EBI Protein kinase 1.5E-11
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 6.7E-20
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.5E-14
Sequence
Target Sequence 
>C. ELEGANS:187202_S_AT
gatgagaaaacgttccaaccgtcttggaatgcgatcgatgggaaaatcaatagagtgtca
tattcagtactcatttgatcctgtcacccttcgcccactaaatcctattggacgtacggg
actttctggtcgtggtttgcttggtcgttggggtccaaaccacgcagcagatccgatcgt
ttctagaacaaacgacaatggtgatttggagtttgttgcagttcaacgtcatgacaatgg
cgagtgggcaattcctggaggaatggtggatgctggagagcatgtttcacaaactctacg
gcgcgaattcgcagaagaagcaatgcatggaattgtcgattctgaaaatcttgatgaatt
gtggaataatggtaaagagttatacagaggttacgttgatgacccacgtaacactgataa
cgcatggatggagactgttgttttcaattttcatgattcaaaaggccttctgaaaaatgt
ggctcttcaagcaggagatgatgctaaagctttacgctggattgcagttaattcaaatga
gccactttacgcttctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGAAAACGTTCCAACCGTCTT 701 403 120 Antisense
CAACCGTCTTGGAATGCGATCGATG 196 187 135 Antisense
CAGTACTCATTTGATCCTGTCACCC 581 207 184 Antisense
CCTTCGCCCACTAAATCCTATTGGA 264 269 207 Antisense
TGGACGTACGGGACTTTCTGGTCGT 661 545 228 Antisense
TGCTTGGTCGTTGGGGTCCAAACCA 272 555 257 Antisense
AAACCACGCAGCAGATCCGATCGTT 559 125 276 Antisense
ATGGCGAGTGGGCAATTCCTGGAGG 138 47 356 Antisense
CACAAACTCTACGGCGCGAATTCGC 405 195 407 Antisense
TGATGACCCACGTAACACTGATAAC 261 567 516 Antisense
AAATGAGCCACTTTACGCTTCTCAT 594 119 654 Antisense
Sequence Source Affymetrix Proprietary Database