[Home] | [Total List]

[187199_at]

Description C02B8.3 /REP_DB=WormBase Gene ID /WP=CE03892 /TR=SW:Q11093 /GB=AAA81441.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 17      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 440
1 2 3 4 range
A 573.6
(3)
P 		385.3
(-0.8)
P 		272.4
(-3)
P 		538
(2.3)
P 		301
B 626
(1.6)
P 		361
(-2.9)
P 		354.6
(-3)
P 		712.3
(3)
P 		358
C 565.3
(3)
P 		456.2
(0.5)
P 		306.9
(-3)
P 		532.2
(2.2)
P 		258
avr 588.3
(2.9) 		400.8
(-1.1) 		311.3
(-3) 		594.2
(3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 662.5
(3)
P 		491.2
(-0)
P 		457.5
(-0.6)
P 		320.3
(-3)
P 		383.4
(-1.9)
P 		424.9
(-1.2)
P 		342
B 724.5
(3)
P 		570.9
(0.7)
P 		600.7
(1.1)
P 		329.1
(-3)
P 		433.2
(-1.4)
P 		403.2
(-1.9)
P 		395
C 809.5
(3)
P 		459.3
(-1.1)
P 		536.4
(-0.2)
P 		291.4
(-3)
P 		374.6
(-2)
P 		355
(-2.3)
P 		518
avr 732.2
(3) 		507.1
(-0.2) 		531.5
(0.1) 		313.6
(-3) 		397.1
(-1.8) 		394.4
(-1.8) 		419
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 208.9
(3)
P 		83.6
(-2.5)
P 		71.2
(-3)
P 		78.8
(-2.7)
P 		138
B 199.6
(3)
P 		89.2
(-2.6)
P 		82.2
(-3)
P 		151.8
(0.6)
P 		117
C 187.1
(3)
P 		131.2
(-0.4)
P 		107
(-1.9)
P 		89.7
(-3)
P 		97
avr 198.5
(3) 		101.3
(-2.2) 		86.8
(-3) 		106.8
(-1.9) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 122.1
(-0.4)
P 		174.7
(3)
P 		99.6
(-1.8)
P 		81.2
(-3)
P 		115.7
(-0.8)
P 		103.5
(-1.6)
P 		94
B 252.1
(3)
P 		190
(0.7)
P 		145.9
(-0.9)
P 		87.2
(-3)
P 		176
(0.2)
P 		150.3
(-0.7)
P 		165
C 300
(3)
P 		140.1
(-1)
P 		136.5
(-1.1)
P 		58.6
(-3)
P 		121.2
(-1.4)
P 		118.9
(-1.5)
P 		241
avr 224.7
(3) 		168.3
(0.7) 		127.3
(-0.9) 		75.7
(-3) 		137.6
(-0.5) 		124.2
(-1) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16253
Sequence Type Exemplar sequence
Representative Public ID C02B8.3 NCBI
Target Description C02B8.3 /REP_DB=WormBase Gene ID /WP=CE03892 /TR=SW:Q11093 /GB=AAA81441.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076970 NCBI Caenorhabditis elegans C02B8.3 (C02B8.3) mRNA, complete cds. 11/11 None
SNAP00000001641 ENSEMBL cdna:SNAP chromosome:CEL140:X:8139522:8139982:1 11/11 None
GENEFINDER00000001646 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8139522:8139982:1 11/11 None
C02B8.3 ENSEMBL cdna:known chromosome:CEL140:X:8139462:8140171:1 gene:C02B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8139520-8139981(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B8.3
Entrez Gene 182104 Entrez gene
SwissProt Q11093 EMBL-EBI
WormBase CE03892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81441 Hypothetical protein C02B8.3 [Caenorhabditis elegans] ref|NP_509371.1| C02B8.3 [Caenorhabditis elegans] sp|Q11093|YWZ3_CAEEL Hypothetical protein C02B8.3 in chromosome X 2.0E-76
blast CAB04514 Hypothetical protein F58E10.7 [Caenorhabditis elegans] ref|NP_506477.1| F58E10.7 [Caenorhabditis elegans] 7.0E-58
blast CAA94915 Hypothetical protein F23D12.3 [Caenorhabditis elegans] ref|NP_510403.1| F23D12.3 [Caenorhabditis elegans] 2.0E-53
Sequence
Target Sequence 
>C. ELEGANS:187199_AT
accccgtgtaccaactatgtagctacatgccatccccaaaagattacaacaagttccacg
tgaatggagttcaaatggacagcgacgactacaccactattttgacaatgtttgccaacc
aacttccaggatacgctgttttaaatgtctgtctacaagaggccttccagttccacaaag
ccaaccacccatcccaagtcagcctgagatgtttgtgtcaaagagacggttgcaacctgc
cgaaaacgttgacggattttcttgacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCCGTGTACCAACTATGTAGCTA 161 89 113 Antisense
CTACATGCCATCCCCAAAAGATTAC 314 227 135 Antisense
AATGGACAGCGACGACTACACCACT 201 161 186 Antisense
GACGACTACACCACTATTTTGACAA 554 379 196 Antisense
GACAATGTTTGCCAACCAACTTCCA 298 365 216 Antisense
AACCAACTTCCAGGATACGCTGTTT 223 147 229 Antisense
TACGCTGTTTTAAATGTCTGTCTAC 547 649 244 Antisense
GTCTGTCTACAAGAGGCCTTCCAGT 178 471 259 Antisense
ACCCATCCCAAGTCAGCCTGAGATG 455 89 299 Antisense
AAGAGACGGTTGCAACCTGCCGAAA 94 153 333 Antisense
ACGTTGACGGATTTTCTTGACTTCA 214 95 358 Antisense
Sequence Source Affymetrix Proprietary Database