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[187198_s_at]

Description Y54E10A.15 /REP_DB=WormBase Gene ID /WP=CE24444 /TR=Q9N3E4 /GB=AAF60769.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 27      6grp_cgc > 28      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 7.9
(-1.9)
A 		27
(3)
A 		3.6
(-3)
A 		7.3
(-2.1)
A 		23
B 5.7
(1.3)
A 		7.3
(3)
A 		1.5
(-3)
A 		6.5
(2.2)
A 		6
C 5.2
(-3)
A 		8.8
(-2.5)
A 		6.5
(-2.8)
A 		45
(3)
A 		40
avr 6.3
(-2.1) 		14.4
(1) 		3.9
(-3) 		19.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 46.5
(2.5)
A 		14.4
(-1.5)
A 		3.5
(-2.9)
A 		2.5
(-3)
A 		4.9
(-2.7)
A 		50.6
(3)
A 		48
B 3.3
(-3)
A 		3.5
(-2.9)
A 		7.9
(-2.2)
A 		4.7
(-2.7)
A 		3.1
(-3)
A 		40.6
(3)
A 		38
C 8
(-1.5)
A 		10.3
(-1)
A 		5.2
(-2.2)
A 		4.7
(-2.3)
A 		1.7
(-3)
A 		27.3
(3)
A 		26
avr 19.3
(-0.3) 		9.4
(-2) 		5.5
(-2.6) 		4
(-2.9) 		3.2
(-3) 		39.5
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.9
(-0.6)
A 		5.9
(3)
A 		0.9
(-3)
A 		1.1
(-2.8)
A 		5
B 1.8
(3)
A 		1.8
(3)
A 		0.3
(-3)
A 		1.4
(1.4)
A 		2
C 1.7
(-3)
A 		2.5
(-2.2)
A 		2.3
(-2.4)
A 		7.6
(3)
A 		6
avr 2.1
(-0.5) 		3.4
(3) 		1.2
(-3) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.6
(1.1)
A 		5.1
(-0.7)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		1.5
(-2.5)
A 		12.3
(3)
A 		12
B 1.2
(-3)
A 		1.2
(-3)
A 		1.9
(-2.7)
A 		1.2
(-3)
A 		1.3
(-3)
A 		15.2
(3)
A 		14
C 3
(-1.3)
A 		3.2
(-1.1)
A 		1.3
(-2.4)
A 		0.9
(-2.7)
A 		0.5
(-3)
A 		9.2
(3)
A 		9
avr 4.3
(-1.2) 		3.2
(-1.8) 		1.3
(-2.8) 		0.9
(-3) 		1.1
(-2.9) 		12.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187198_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.149
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.15 NCBI
Target Description Y54E10A.15 /REP_DB=WormBase Gene ID /WP=CE24444 /TR=Q9N3E4 /GB=AAF60769.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058725(11), NM_182086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058725 NCBI Caenorhabditis elegans CDT (S. pombe licensing factor) homolog family member (cdt-1) (cdt-1) mRNA, complete cds. 11/11 None
NM_182086 NCBI Caenorhabditis elegans CDT (S. pombe licensing factor) homolog family member (cdt-1) (cdt-1) mRNA, complete cds. 11/11 None
SNAP00000033835 ENSEMBL cdna:SNAP chromosome:CEL140:I:3223620:3246062:-1 11/11 None
GENEFINDER00000033841 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3223620:3227968:-1 11/11 None
Y54E10A.15a ENSEMBL cdna:known chromosome:CEL140:I:3223223:3227968:-1 gene:Y54E10A.15 11/11 None
Y54E10A.15b ENSEMBL cdna:known chromosome:CEL140:I:3223229:3228023:-1 gene:Y54E10A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3224092-3227968(-) 95.73 95.73
Public Domain and Genome References
Ensembl Y54E10A.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60769 Cdt (s. pombe licensing factor) homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_491126.1| CDT (S. pombe licensing factor) homolog family member (cdt-1) [Caenorhabditis elegans] 0.0
blast AAO21412 Cdt (s. pombe licensing factor) homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_871886.2| CDT (S. pombe licensing factor) homolog family member (cdt-1) [Caenorhabditis elegans] 0.0
blast CAE68991 Hypothetical protein CBG14978 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187198_S_AT
aaaaggcggctgaagcttgtattgataaggatcttgagagaagaaagcaacgtctaacac
tgctccgtgaccgatatgttcgaattgtgtgcaatcattatacggcgaaacgggctcaga
cgatggaaattgatgtgatttgcaaatttgtgcagttcagctcgtccaactcgtcttcga
ttcctgatattatggatcatttgagattgttgtgtgaggtcgcaccgatgtacatctctg
aagctagttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGGCGGCTGAAGCTTGTATTGA 503 131 1634 Antisense
AAAGCAACGTCTAACACTGCTCCGT 369 123 1677 Antisense
ACACTGCTCCGTGACCGATATGTTC 649 109 1690 Antisense
CCGATATGTTCGAATTGTGTGCAAT 142 265 1704 Antisense
TTGTGTGCAATCATTATACGGCGAA 349 707 1718 Antisense
ATACGGCGAAACGGGCTCAGACGAT 324 21 1733 Antisense
AAATTTGTGCAGTTCAGCTCGTCCA 678 115 1777 Antisense
CCAACTCGTCTTCGATTCCTGATAT 79 277 1799 Antisense
GAGATTGTTGTGTGAGGTCGCACCG 367 397 1836 Antisense
TGAGGTCGCACCGATGTACATCTCT 644 567 1848 Antisense
GATGTACATCTCTGAAGCTAGTTTA 155 409 1860 Antisense
Sequence Source Affymetrix Proprietary Database