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[187197_s_at]

Description C13B9.1 /REP_DB=WormBase Gene ID /WP=CE25776 /TR=SW:Q09234 /GB=AAA62514.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      6grp_highest_nonorm > 72      6grp_total > 0      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 602
1 2 3 4 range
A 657.8
(3)
P 		225.6
(-2)
A 		137.9
(-3)
A 		283.3
(-1.3)
P 		520
B 683.6
(3)
P 		111.2
(-2.7)
A 		81.3
(-3)
A 		322.9
(-0.6)
P 		602
C 477.2
(3)
P 		95.1
(-3)
A 		123.3
(-2.6)
A 		404.7
(1.9)
P 		382
avr 606.2
(3) 		144
(-2.6) 		114.2
(-3) 		337
(-0.3) 		492

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 437.3
(-0.6)
P 		680.1
(3)
P 		279.5
(-3)
P 		460.4
(-0.3)
P 		357.5
(-1.8)
P 		455.9
(-0.4)
P 		401
B 355.8
(-2.1)
P 		523.1
(3)
P 		334.8
(-2.7)
P 		441.6
(0.5)
P 		325.8
(-3)
P 		450.2
(0.8)
P 		197
C 420.1
(-0.1)
P 		636.6
(3)
P 		426.8
(-0)
P 		452.5
(0.3)
P 		222.2
(-3)
P 		519.3
(1.3)
P 		414
avr 404.4
(-1) 		613.3
(3) 		347
(-2.1) 		451.5
(-0.1) 		301.8
(-3) 		475.1
(0.3) 		312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 239.5
(3)
P 		49
(-2.6)
A 		36
(-3)
A 		41.5
(-2.8)
P 		204
B 218
(3)
P 		27.5
(-2.7)
A 		18.8
(-3)
A 		68.8
(-1.5)
P 		199
C 158
(3)
P 		27.4
(-3)
A 		43
(-2.3)
A 		68.2
(-1.1)
P 		131
avr 205.2
(3) 		34.6
(-2.9) 		32.6
(-3) 		59.5
(-2.1) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 80.6
(-2.3)
P 		241.9
(3)
P 		60.9
(-3)
P 		116.8
(-1.1)
P 		107.9
(-1.4)
P 		111
(-1.3)
P 		181
B 123.8
(-0.3)
P 		174.1
(3)
P 		81.3
(-3)
P 		117
(-0.7)
P 		132.4
(0.3)
P 		167.9
(2.6)
P 		93
C 155.7
(1.1)
P 		194.3
(3)
P 		108.6
(-1.2)
P 		91
(-2.1)
P 		71.9
(-3)
P 		173.8
(2)
P 		122
avr 120
(-1.2) 		203.4
(3) 		83.6
(-3) 		108.3
(-1.8) 		104.1
(-2) 		150.9
(0.4) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187197_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6208
Sequence Type Exemplar sequence
Representative Public ID C13B9.1 NCBI
Target Description C13B9.1 /REP_DB=WormBase Gene ID /WP=CE25776 /TR=SW:Q09234 /GB=AAA62514.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029429(11), NM_066063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029429 NCBI Caenorhabditis elegans F23A7.7 (F23A7.7) mRNA, complete cds. 11/11 None
NM_066063 NCBI Caenorhabditis elegans C13B9.1 (C13B9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000006908 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6628224:6631296:1 10/11 None
SNAP00000006903 ENSEMBL cdna:SNAP chromosome:CEL140:III:6630726:6631296:1 10/11 None
GENEFINDER00000042974 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16219613:16235571:1 11/11 None
SNAP00000042970 ENSEMBL cdna:SNAP chromosome:CEL140:X:16231985:16235571:1 11/11 None
C13B9.1.1 ENSEMBL cdna:known chromosome:CEL140:III:6628941:6631475:1 gene:C13B9.1 11/11 None
F23A7.7 ENSEMBL cdna:known chromosome:CEL140:X:16231985:16235571:1 gene:F23A7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006902 1/11 Cross Hyb Matching Probes None
C13B9.1.2 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl C13B9.1
F23A7.7
Entrez Gene 175941 Entrez gene
3565558 Entrez gene
SwissProt Q09234 EMBL-EBI
Q7Z1J6 EMBL-EBI
WormBase CE32795 Wormbase
CE34176 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92378 Hypothetical protein F23A7.7 [Caenorhabditis elegans] ref|NP_001024600.1| F23A7.7 [Caenorhabditis elegans] 0.0
blast ABA03110 Hypothetical protein W03G1.4 [Caenorhabditis elegans] pir||C88628 protein W03G1.4 [imported] - Caenorhabditis elegans 0.0
blast AAG24174 Hypothetical protein R09E12.6 [Caenorhabditis elegans] ref|NP_503320.1| R09E12.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 2.5E-59
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187197_S_AT
gcaatctatgcgccaggaatcttgaaatttgcgaatgtggaagtcagcaagaaaagtgtg
aactcatttacggaaatctgaaaaagtggctggaattgatactgaactgttatagaaata
taataattcaaacaaaaaaatcaatgttcgaagaactcccaagctcctgtcccatgagta
aaggaatcttaaaacaaaaactccttgacgaaatggcagacgatgagatgtggatgatta
tgctcgtccccagaaaaaatcaaggagccttctcgattagcaacaaatcggaacatctca
ctgccttcccaggagacctgatgaactggccttcaggccttctctatagcgcaatcaaac
tggaagatgagaacgtggacacaagccttttgtctacagccgtgagctcgctgttcacaa
atcatctgaaaactagatttgaacacgcgcgcaatgcctatcgtaaaaagtacggagagg
atccaccaaaaatcacgcttgtgaagcgtccaattgccgatgcggagcaatttctcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCTATGCGCCAGGAATCTTGA 197 323 254 Antisense
GGAGCCTTCTCGATTAGCAACAAAT 462 521 517 Antisense
ACAAATCGGAACATCTCACTGCCTT 563 111 536 Antisense
CTGCCTTCCCAGGAGACCTGATGAA 373 237 554 Antisense
TGAACTGGCCTTCAGGCCTTCTCTA 105 573 575 Antisense
GCCTTCTCTATAGCGCAATCAAACT 632 275 590 Antisense
GAACGTGGACACAAGCCTTTTGTCT 388 345 624 Antisense
TCTACAGCCGTGAGCTCGCTGTTCA 32 615 646 Antisense
AGCTCGCTGTTCACAAATCATCTGA 339 81 658 Antisense
TGTGAAGCGTCCAATTGCCGATGCG 428 555 753 Antisense
GCCGATGCGGAGCAATTTCTCACTG 203 285 769 Antisense
Sequence Source Affymetrix Proprietary Database