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[187196_at]

Description Y54E10A.13 /REP_DB=WormBase Gene ID /WP=CE24442 /TR=Q9N3E7 /GB=AAF60767.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 2.5
(-3)
A 		8.6
(-2.6)
A 		9.8
(-2.5)
A 		97.8
(3)
A 		95
B 3.8
(-3)
A 		10.9
(-1.7)
A 		13.3
(-1.3)
A 		37.3
(3)
A 		34
C 10.7
(2)
A 		8.1
(0.5)
A 		2.3
(-3)
A 		12.3
(3)
A 		10
avr 5.7
(-3) 		9.2
(-2.5) 		8.5
(-2.6) 		49.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 17.5
(3)
A 		4.8
(-2.7)
A 		4.1
(-3)
A 		8.1
(-1.2)
A 		4.7
(-2.7)
A 		12.2
(0.6)
A 		13
B 10.1
(3)
A 		2.9
(-3)
A 		3.7
(-2.3)
A 		9.4
(2.4)
A 		9.1
(2.2)
A 		6
(-0.4)
A 		7
C 2.9
(-3)
A 		3.5
(-2.7)
A 		9.6
(-0)
A 		16.5
(3)
A 		7.7
(-0.9)
A 		13
(1.5)
A 		14
avr 10.2
(2.1) 		3.7
(-3) 		5.8
(-1.3) 		11.3
(3) 		7.2
(-0.2) 		10.4
(2.3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.9
(-3)
A 		1.9
(-2.6)
A 		2.6
(-2.2)
A 		14.3
(3)
A 		13
B 1.2
(-3)
A 		2.7
(-1.7)
A 		3.1
(-1.3)
A 		7.9
(3)
A 		7
C 3.5
(3)
A 		2.3
(0.3)
A 		0.8
(-3)
A 		2.1
(-0.1)
A 		3
avr 1.9
(-3) 		2.3
(-2.6) 		2.2
(-2.7) 		8.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.2
(3)
A 		1.7
(-0.9)
A 		0.9
(-3)
A 		2
(-0.1)
A 		1.4
(-1.7)
A 		3
(2.5)
A 		2
B 3.5
(2.6)
A 		1
(-2.8)
A 		0.9
(-3)
A 		2.5
(0.4)
A 		3.7
(3)
A 		2.2
(-0.2)
A 		3
C 1.1
(-3)
A 		1.1
(-3)
A 		2.4
(-0.6)
A 		3.3
(1.1)
A 		2.5
(-0.4)
A 		4.3
(3)
A 		3
avr 2.6
(1.1) 		1.3
(-3) 		1.4
(-2.7) 		2.6
(1.1) 		2.5
(0.8) 		3.2
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.102
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.13 NCBI
Target Description Y54E10A.13 /REP_DB=WormBase Gene ID /WP=CE24442 /TR=Q9N3E7 /GB=AAF60767.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058720 NCBI Caenorhabditis elegans Y54E10A.13 (Y54E10A.13) mRNA, complete cds. 11/11 None
GENEFINDER00000033851 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3193660:3203230:-1 11/11 None
Y54E10A.13 ENSEMBL cdna:known chromosome:CEL140:I:3199541:3203230:-1 gene:Y54E10A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3199540-3203230(-) 99.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10A.13
Entrez Gene 190259 Entrez gene
SwissProt Q9N3E7 EMBL-EBI
WormBase CE24442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60766 Hypothetical protein Y54E10A.12 [Caenorhabditis elegans] ref|NP_491120.1| Y54E10A.12 [Caenorhabditis elegans] 0.0
blast AAF60767 Hypothetical protein Y54E10A.13 [Caenorhabditis elegans] ref|NP_491121.1| Y54E10A.13 [Caenorhabditis elegans] 9.0E-56
blast AAF60767 Hypothetical protein Y54E10A.13 [Caenorhabditis elegans] ref|NP_491121.1| Y54E10A.13 [Caenorhabditis elegans] 6.0E-50
blast AAB96721 Hypothetical protein F57B10.4 [Caenorhabditis elegans] ref|NP_491895.1| F57B10.4 [Caenorhabditis elegans] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:187196_AT
accaaagctgccaaagcgagtcgtcaaaatggcgcaactcgatggatcaaagtaagagaa
gctgagcaacttgctcgtcggcaggcaccaccaccgtcaccgcaacaaggacctccaatt
catagagtgagcaccagggggtcgtggtactccgccgaccacgccatgagctcctcggac
cccgtctccagctacaagatcttcatctgcctctgtggctcggcaggcacatccaccgtc
tccgcgaccaggagttcccactgctctgtctcactaccgcgtccgtcatcaccttcgatt
cgtagcaattcgtcagttcctacggcgtctggtggagcgagaaatggaagcccatcgact
agaagttctacgtcgtcttctatccaaggctctccaattgctccaacgacttctgcctca
caaccgactcgtccaagtgattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAAAGCTGCCAAAGCGAGTCGTC 288 85 28 Antisense
AATGGCGCAACTCGATGGATCAAAG 49 163 55 Antisense
TGAGCAACTTGCTCGTCGGCAGGCA 202 569 90 Antisense
TCACCGCAACAAGGACCTCCAATTC 303 599 124 Antisense
TGAGCACCAGGGGGTCGTGGTACTC 695 567 155 Antisense
AGCTACAAGATCTTCATCTGCCTCT 356 79 217 Antisense
CGTCATCACCTTCGATTCGTAGCAA 157 247 311 Antisense
TAGCAATTCGTCAGTTCCTACGGCG 512 641 330 Antisense
TTCCTACGGCGTCTGGTGGAGCGAG 57 699 344 Antisense
GGAAGCCCATCGACTAGAAGTTCTA 359 529 373 Antisense
ACAACCGACTCGTCCAAGTGATTCG 565 113 447 Antisense
Sequence Source Affymetrix Proprietary Database