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[187195_at]

Description Y54E10A.10 /REP_DB=WormBase Gene ID /WP=CE24439 /TR=Q9N3F0 /GB=AAF60765.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 63      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 835.1
(-0.2)
P 		872.6
(0.5)
P 		993.9
(3)
P 		698.2
(-3)
P 		296
B 900.1
(2.2)
P 		766.6
(-3)
P 		899.1
(2.2)
P 		919.8
(3)
P 		153
C 932.9
(3)
P 		739.3
(-1.9)
P 		779.6
(-0.9)
P 		697.6
(-3)
P 		235
avr 889.4
(2.9) 		792.8
(-1.9) 		890.9
(3) 		771.9
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 252.3
(-3)
P 		439.1
(-0.5)
P 		325.5
(-2)
P 		504
(0.4)
P 		386.8
(-1.2)
P 		694.7
(3)
P 		442
B 365.4
(-2.2)
P 		339.3
(-2.7)
P 		328
(-3)
P 		430
(-0.7)
P 		545.3
(1.9)
P 		594.7
(3)
P 		267
C 482.9
(0)
P 		327.1
(-2.8)
P 		447.6
(-0.6)
P 		318.9
(-3)
P 		510.2
(0.5)
P 		644.5
(3)
P 		326
avr 366.9
(-3) 		368.5
(-3) 		367
(-3) 		417.6
(-1.9) 		480.8
(-0.5) 		644.6
(3) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 304
(3)
P 		189.4
(-0.4)
P 		259.8
(1.7)
P 		102.2
(-3)
P 		202
B 287
(3)
P 		189.3
(-3)
P 		208.3
(-1.8)
P 		196
(-2.6)
P 		98
C 308.8
(3)
P 		212.5
(-0)
P 		271.7
(1.8)
P 		117.6
(-3)
P 		191
avr 299.9
(3) 		197.1
(-0.8) 		246.6
(1) 		138.6
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 46.5
(-3)
P 		156.2
(2.4)
P 		70.9
(-1.8)
P 		127.8
(1)
P 		116.7
(0.4)
P 		169.1
(3)
P 		123
B 127.2
(-1)
P 		113
(-1.6)
P 		79.7
(-3)
P 		113.9
(-1.6)
P 		221.6
(3)
P 		221.8
(3)
P 		142
C 179
(1.5)
P 		99.8
(-1.6)
P 		113.9
(-1)
P 		64.1
(-3)
P 		165.1
(1)
P 		215.8
(3)
P 		152
avr 117.6
(-1.5) 		123
(-1.2) 		88.2
(-3) 		101.9
(-2.3) 		167.8
(1.2) 		202.2
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.116
Sequence Type Exemplar sequence
Representative Public ID Y54E10A.10 NCBI
Target Description Y54E10A.10 /REP_DB=WormBase Gene ID /WP=CE24439 /TR=Q9N3F0 /GB=AAF60765.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058716 NCBI Caenorhabditis elegans Y54E10A.10 (Y54E10A.10) mRNA, complete cds. 11/11 None
SNAP00000033829 ENSEMBL cdna:SNAP chromosome:CEL140:I:3173360:3192636:-1 11/11 None
Y54E10A.10 ENSEMBL cdna:known chromosome:CEL140:I:3173269:3176320:-1 gene:Y54E10A.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033854 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033844 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3173359-3176311(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54E10A.10
Entrez Gene 171892 Entrez gene
SwissProt Q9N3F0 EMBL-EBI
WormBase CE24439 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258104_AT brix domain-containing protein at
CANINE:1586458_AT similar to Brix domain containing protein 1 cfa
CANINE_2:CFA.10545.2.S1_S_AT similar to Brix domain containing protein 1 cfa
DROSOPHILA_2:1641373_AT dm
DROSGENOME1:151780_AT dm
CHICKEN:GGA.11684.1.S1_AT similar to Brix domain containing protein 1 gga
HU35KSUBA:RC_AA621340_AT brix domain containing 1 hs
U133_X3P:HS.10600.0.S1_3P_AT brix domain containing 1 hs
HG-U133_PLUS_2:225866_AT brix domain containing 1 hs
HG-U133B:225866_AT brix domain containing 1 hs
HG-U95B:48055_AT brix domain containing 1 hs
HG-U95D:82121_AT brix domain containing 1 hs
MOUSE430A_2:1425884_AT brix domain containing 1 mm
MOUSE430_2:1425884_AT brix domain containing 1 mm
MOE430A:1425884_AT brix domain containing 1 mm
MOUSE430_2:1444666_AT brix domain containing 1 mm
MOE430B:1444666_AT brix domain containing 1 mm
MU11KSUBA:AA273852_AT brix domain containing 1 mm
MG-U74AV2:97703_AT brix domain containing 1 mm
MG-U74AV2:160585_AT brix domain containing 1 mm
MOE430A:1450423_S_AT brix domain containing 1 mm
MOUSE430A_2:1450423_S_AT brix domain containing 1 mm
MOUSE430_2:1450423_S_AT brix domain containing 1 mm
MOE430A:1421945_A_AT brix domain containing 1 mm
MOUSE430A_2:1421945_A_AT brix domain containing 1 mm
MOUSE430_2:1421945_A_AT brix domain containing 1 mm
MU19KSUBC:TC41607_AT brix domain containing 1 mm
MU19KSUBC:TC34973_AT Brix domain containing 1, mRNA (cDNA clone MGC:35797 IMAGE:4009314) mm
RG-U34C:RC_AI234830_AT brix domain containing 1 (predicted) rn
RAE230B:1392514_AT brix domain containing 1 (predicted) rn
RAT230_2:1392514_AT brix domain containing 1 (predicted) rn
RAE230B:1391645_AT Brix domain containing 1 (predicted) rn
RAT230_2:1391645_AT Brix domain containing 1 (predicted) rn
YEAST_2:1771626_AT Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles Sc
Protein Similarities
Method ID Description E-Value
blast AAU20830 Hypothetical protein Y54E10A.11 [Caenorhabditis elegans] ref|NP_491118.2| Y54E10A.11 [Caenorhabditis elegans] 0.0
blast AAF60765 Hypothetical protein Y54E10A.10 [Caenorhabditis elegans] ref|NP_491117.1| Y54E10A.10 [Caenorhabditis elegans] sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog 1.0E-154
blast AAF60765 Hypothetical protein Y54E10A.10 [Caenorhabditis elegans] ref|NP_491117.1| Y54E10A.10 [Caenorhabditis elegans] sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog 1.0E-141
blast CAE60543 Hypothetical protein CBG04170 [Caenorhabditis briggsae] 1.0E-139
blast CAE60543 Hypothetical protein CBG04170 [Caenorhabditis briggsae] 1.0E-127
blast AAL13477 GH01229p [Drosophila melanogaster] 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR007109 EMBL-EBI Brix domain 7.8E-70
Pfam IPR007109 EMBL-EBI Brix domain 7.8E-70
Sequence
Target Sequence 
>C. ELEGANS:187195_AT
agaagccgaattgcctgacttttggcagaacttacgatggacagcttctcgatatggctg
agctcagaatcacttcctacaaatcctcatccaactttgaggccgccaaaatgacactcg
gatcaaagccatgtgtcattctcgagggagctgctttcgaatcagacggtgatatgaaac
gtatcggaaacctgatggtcgactggttccgcggaccaaaagtcgacacagttcgtctcg
aaggactcgaaacagtgattgtattcacggctctcgacgagacaaacttggctcttcgtg
tctatcgtccgatgctcaaaaagtcggcgacagctactccacgcgtcgagctcgccgaaa
tgggaccatcgatcagttttgaggtgatgcgtaagaagttggccgacgatgctctgttca
agttggcatgcaagaagccaaaggctctgatgaagaagagaagaaagaatttgagtgagg
atgtgttcggaaatcagttggctcgagttcatgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCGAATTGCCTGACTTTTGG 423 71 296 Antisense
TGGCTGAGCTCAGAATCACTTCCTA 472 545 350 Antisense
TCCTCATCCAACTTTGAGGCCGCCA 431 591 379 Antisense
GAGGCCGCCAAAATGACACTCGGAT 560 405 394 Antisense
AGCCATGTGTCATTCTCGAGGGAGC 131 85 422 Antisense
AAACCTGATGGTCGACTGGTTCCGC 229 125 483 Antisense
GTTCCGCGGACCAAAAGTCGACACA 261 441 501 Antisense
GTATTCACGGCTCTCGACGAGACAA 1 453 556 Antisense
TTCGTGTCTATCGTCCGATGCTCAA 427 695 590 Antisense
CGAGCTCGCCGAAATGGGACCATCG 377 251 642 Antisense
ATCAGTTGGCTCGAGTTCATGTTGG 292 29 788 Antisense
Sequence Source Affymetrix Proprietary Database