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[187193_at]

Description T05H10.4 /REP_DB=WormBase Gene ID /WP=CE01641 /TR=SW:Q09348 /GB=CAA87791.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 55      4grp_high_8_8 > 20      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 28      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 93.7
(-1.2)
P 		130.8
(1.8)
P 		72.3
(-3)
P 		144.9
(3)
P 		73
B 102.9
(1.6)
P 		110.2
(2.9)
P 		76.7
(-3)
P 		110.9
(3)
P 		34
C 121.2
(0.2)
P 		94.2
(-3)
P 		93.9
(-3)
P 		145.7
(3)
P 		52
avr 105.9
(-0.2) 		111.7
(0.5) 		81
(-3) 		133.8
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 119.8
(-2.7)
P 		119.1
(-2.7)
P 		101.7
(-3)
P 		184.2
(-1.5)
P 		216.4
(-0.9)
P 		424.7
(3)
P 		323
B 120.7
(-3)
P 		136.3
(-2.7)
P 		155.1
(-2.5)
P 		118.7
(-3)
P 		218.1
(-1.5)
P 		516.6
(3)
P 		398
C 101.9
(-2.8)
P 		155
(-2.1)
P 		86.1
(-3)
P 		147.5
(-2.2)
P 		218.8
(-1.3)
P 		550.2
(3)
P 		464
avr 114.1
(-3) 		136.8
(-2.6) 		114.3
(-3) 		150.1
(-2.4) 		217.8
(-1.4) 		497.2
(3) 		383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 34.1
(3)
P 		28.4
(0.8)
P 		18.9
(-3)
P 		21.2
(-2.1)
P 		15
B 32.8
(3)
P 		27.2
(0.8)
P 		17.8
(-3)
P 		23.6
(-0.7)
P 		15
C 40.1
(3)
P 		27.1
(-2)
P 		32.7
(0.1)
P 		24.6
(-3)
P 		16
avr 35.7
(3) 		27.6
(-0.9) 		23.1
(-3) 		23.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 22.1
(-3)
P 		42.3
(-1.5)
P 		22.2
(-3)
P 		46.7
(-1.2)
P 		65.3
(0.2)
P 		103.4
(3)
P 		81
B 42
(-2.6)
P 		45.4
(-2.5)
P 		37.7
(-2.8)
P 		31.5
(-3)
P 		88.6
(-0.9)
P 		192.6
(3)
P 		161
C 37.8
(-2.4)
P 		47.3
(-2.1)
P 		21.9
(-3)
P 		29.7
(-2.7)
P 		70.8
(-1.2)
P 		184.2
(3)
P 		162
avr 34
(-2.7) 		45
(-2.2) 		27.3
(-3) 		36
(-2.6) 		74.9
(-0.8) 		160.1
(3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3263
Sequence Type Exemplar sequence
Representative Public ID T05H10.4 NCBI
Target Description T05H10.4 /REP_DB=WormBase Gene ID /WP=CE01641 /TR=SW:Q09348 /GB=CAA87791.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063288 NCBI Caenorhabditis elegans T05H10.4 (T05H10.4) mRNA, complete cds. 11/11 None
SNAP00000019964 ENSEMBL cdna:SNAP chromosome:CEL140:II:8053076:8054637:1 11/11 None
GENEFINDER00000019975 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8053076:8054637:1 11/11 None
T05H10.4 ENSEMBL cdna:known chromosome:CEL140:II:8053053:8054886:1 gene:T05H10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8053072-8054634(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05H10.4
Entrez Gene 174293 Entrez gene
SwissProt Q09348 EMBL-EBI
WormBase CE01641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87791 Hypothetical protein T05H10.4 [Caenorhabditis elegans] ref|NP_495689.1| T05H10.4 [Caenorhabditis elegans] sp|Q09348|YRS4_CAEEL Hypothetical protein T05H10.4 in chromosome II 0.0
blast CAE67838 Hypothetical protein CBG13423 [Caenorhabditis briggsae] emb|CAE67768.1| Hypothetical protein CBG13343 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:187193_AT
gaaccagtcggtcaggcaggaagtcatgctggtttgccaaagacaattcgagagatcgtt
gatcgttcctacaatgaaaactggccagttgaagctcgtacaatcaaggttgatgaggag
atccaaagactcggactgcctgaaaacccacgtcttggacgacaaattgacaatcgtctt
gcttacttgagaagagttaagaacttgcatgaaacacgccggattcaagatcaggttaac
ggtacgatggtgatcaaggatccggtcaaggaggcaatgctgcaagcgttaatggaacaa
aatggtggacaattgactgtcggccagggttttgttgatcaaataattgccaatcaagga
attcctgaaatgcctatcaaaaaagaggaacccactcaaccagttgagagcatggaaatg
gctgaacaagttgcaaaaccattggcaatgaatccaagtccagatttctttcaattcctt
caaaatcagaagttgtcacatgaacacgaacagcaacagcagcagcttcatgcggctatt
cttgctcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCAGTCGGTCAGGCAGGAAGTC 183 345 700 Antisense
GAGATCGTTGATCGTTCCTACAATG 579 395 751 Antisense
AAACTGGCCAGTTGAAGCTCGTACA 213 125 777 Antisense
GGAGATCCAAAGACTCGGACTGCCT 238 519 816 Antisense
GCCTGAAAACCCACGTCTTGGACGA 57 263 837 Antisense
TTGACAATCGTCTTGCTTACTTGAG 608 703 866 Antisense
TGTCGGCCAGGGTTTTGTTGATCAA 359 555 1017 Antisense
AAAGAGGAACCCACTCAACCAGTTG 185 93 1081 Antisense
TCCAGATTTCTTTCAATTCCTTCAA 185 591 1158 Antisense
AGCAACAGCAGCAGCTTCATGCGGC 621 75 1211 Antisense
TTCATGCGGCTATTCTTGCTCAAGC 339 687 1226 Antisense
Sequence Source Affymetrix Proprietary Database