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[187192_at]

Description C02B8.5 /REP_DB=WormBase Gene ID /WP=CE03894 /TR=SW:Q11095 /GB=AAA81438.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 42      6grp_total > 24      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 196.4
(1.7)
P 		211.7
(3)
P 		139.8
(-3)
P 		142.3
(-2.8)
A 		72
B 199.9
(3)
P 		169.9
(0.8)
P 		161.4
(0.2)
P 		118.4
(-3)
P 		82
C 271
(3)
P 		168.8
(-1.3)
P 		130.4
(-3)
P 		129.4
(-3)
A 		142
avr 222.4
(3) 		183.5
(0.5) 		143.9
(-2.1) 		130
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 200.1
(3)
P 		110.8
(-2.4)
P 		109.8
(-2.5)
P 		118.5
(-1.9)
A 		100.7
(-3)
A 		106.4
(-2.7)
P 		99
B 103.6
(-2.5)
P 		143.4
(0.7)
P 		171.6
(3)
P 		115.6
(-1.5)
M 		97.3
(-3)
A 		114.9
(-1.6)
P 		74
C 180.8
(3)
P 		161.9
(2.1)
P 		136.3
(0.9)
P 		113.2
(-0.2)
P 		52.2
(-3)
A 		92.3
(-1.1)
A 		129
avr 161.5
(3) 		138.7
(1.2) 		139.2
(1.3) 		115.8
(-0.5) 		83.4
(-3) 		104.5
(-1.4) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 71.5
(3)
P 		46
(-0)
P 		36.5
(-1.1)
P 		20.8
(-3)
A 		51
B 63.7
(3)
P 		42
(-0.4)
P 		37.4
(-1.1)
P 		25.2
(-3)
P 		39
C 89.7
(3)
P 		48.5
(-0.6)
P 		45.5
(-0.9)
P 		21.8
(-3)
A 		68
avr 75
(3) 		45.5
(-0.4) 		39.8
(-1) 		22.6
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 36.9
(2)
P 		39.4
(3)
P 		23.9
(-3)
P 		30.1
(-0.6)
A 		30.4
(-0.5)
A 		25.9
(-2.2)
P 		16
B 36
(-1.1)
P 		47.7
(3)
P 		41.7
(0.9)
P 		30.6
(-3)
M 		39.5
(0.1)
A 		42.8
(1.3)
P 		17
C 67
(3)
P 		49.4
(0.9)
P 		34.7
(-0.9)
P 		22.8
(-2.3)
P 		16.9
(-3)
A 		30.9
(-1.3)
A 		50
avr 46.6
(3) 		45.5
(2.6) 		33.4
(-1.2) 		27.8
(-3) 		28.9
(-2.6) 		33.2
(-1.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17211
Sequence Type Exemplar sequence
Representative Public ID C02B8.5 NCBI
Target Description C02B8.5 /REP_DB=WormBase Gene ID /WP=CE03894 /TR=SW:Q11095 /GB=AAA81438.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076967 NCBI Caenorhabditis elegans C02B8.5 (C02B8.5) mRNA, complete cds. 11/11 None
SNAP00000001637 ENSEMBL cdna:SNAP chromosome:CEL140:X:8120350:8122214:-1 10/11 None
GENEFINDER00000001650 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8120350:8122262:-1 11/11 None
C02B8.5 ENSEMBL cdna:known chromosome:CEL140:X:8120573:8125696:-1 gene:C02B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8120571-8125695(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B8.5
Entrez Gene 182105 Entrez gene
SwissProt Q11095 EMBL-EBI
WormBase CE03894 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81438 Hypothetical protein C02B8.5 [Caenorhabditis elegans] ref|NP_509368.1| C02B8.5 [Caenorhabditis elegans] sp|Q11095|YWZ5_CAEEL Hypothetical protein C02B8.5 in chromosome X 0.0
blast CAE70354 Hypothetical protein CBG16906 [Caenorhabditis briggsae] 0.0
blast AAA81438 Hypothetical protein C02B8.5 [Caenorhabditis elegans] ref|NP_509368.1| C02B8.5 [Caenorhabditis elegans] sp|Q11095|YWZ5_CAEEL Hypothetical protein C02B8.5 in chromosome X 1.0E-104
blast CAE70354 Hypothetical protein CBG16906 [Caenorhabditis briggsae] 7.0E-79
blast AAA81438 Hypothetical protein C02B8.5 [Caenorhabditis elegans] ref|NP_509368.1| C02B8.5 [Caenorhabditis elegans] sp|Q11095|YWZ5_CAEEL Hypothetical protein C02B8.5 in chromosome X 3.0E-78
blast CAE70354 Hypothetical protein CBG16906 [Caenorhabditis briggsae] 7.0E-52
blast CAA94616 Hypothetical protein T14C1.1 [Caenorhabditis elegans] ref|NP_510400.2| T14C1.1 [Caenorhabditis elegans] 8.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509368.1 4 45-62,101-123,143-165,180-202
C02B8.5 4 45-62,101-123,143-165,180-202
Sequence
Target Sequence 
>C. ELEGANS:187192_AT
tcagccgtgtctctcatatgacagttcaatgatggcggagtcactagatgaggcaatgtt
cacatttccaaatttggcaagtacggatcaagctacacttttccagccacctaatggatt
tggagcagccggtggtggttctgtgagaagtgaagacggtcaaaagccagattatgaaag
tgttgatggcgatgttccaatggcgtcaatggccggcccgtccgtgatgacaacaaaagt
atcgattgccgcgtttggagcagggactccgctggaccagtctgtcaatggagagtgccc
tacatatgcatgtatgagttgtaaaatgtcacttctcaatggctttctggcaaatccaaa
tataggggccgctgacaacgcaacactgacagctcaaagaaatgctttggctataaaact
tgtgcttggagtagtcactagtcttggatgtcagtaccgccgtggtgaagctcttcaaac
gaattccgaatggtgtgggttgtgcaatttgtgttggcagtggagaaagcttcccgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCGTGTCTCTCATATGACAGT 123 625 765 Antisense
CGGATCAAGCTACACTTTTCCAGCC 244 243 848 Antisense
GGATTTGGAGCAGCCGGTGGTGGTT 415 505 880 Antisense
GTTCCAATGGCGTCAATGGCCGGCC 421 439 958 Antisense
AAGTATCGATTGCCGCGTTTGGAGC 69 157 1001 Antisense
GTTTGGAGCAGGGACTCCGCTGGAC 706 451 1017 Antisense
TCCGCTGGACCAGTCTGTCAATGGA 11 597 1032 Antisense
AATGTCACTTCTCAATGGCTTTCTG 604 163 1089 Antisense
AATATAGGGGCCGCTGACAACGCAA 283 171 1123 Antisense
TAGTCTTGGATGTCAGTACCGCCGT 595 653 1203 Antisense
TGGCAGTGGAGAAAGCTTCCCGCCG 214 545 1279 Antisense
Sequence Source Affymetrix Proprietary Database