[Home] | [Total List]

[187191_at]

Description C04A2.1 /REP_DB=WormBase Gene ID /WP=CE01768 /TR=SW:Q09445 /GB=AAC46732.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 63      6grp_total > 84      4grp_total > 55      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 572
1 2 3 4 range
A 835.8
(3)
P 		335.9
(-3)
P 		483.3
(-1.2)
P 		349
(-2.8)
P 		500
B 907.7
(3)
P 		469.2
(-2)
P 		518.8
(-1.4)
P 		381.9
(-3)
P 		526
C 817.3
(3)
P 		464.9
(-2.2)
P 		515
(-1.5)
P 		409.8
(-3)
P 		408
avr 853.6
(3) 		423.3
(-2.5) 		505.7
(-1.4) 		380.2
(-3) 		473

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 214.3
(-3)
P 		347.9
(-1.6)
P 		486.3
(-0.2)
P 		795.3
(3)
P 		547.5
(0.4)
P 		474.8
(-0.3)
P 		581
B 246.8
(-3)
P 		359
(-1.5)
P 		420.4
(-0.7)
P 		696.7
(3)
P 		647.8
(2.3)
P 		561.9
(1.2)
P 		450
C 232.1
(-3)
P 		385.3
(-1.3)
P 		517.6
(0.1)
P 		787.2
(3)
P 		610.2
(1.1)
P 		525.8
(0.2)
P 		555
avr 231.1
(-3) 		364.1
(-1.5) 		474.8
(-0.2) 		759.7
(3) 		601.8
(1.2) 		520.8
(0.3) 		529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 304.3
(3)
P 		72.9
(-2.5)
P 		126.3
(-1.2)
P 		51.1
(-3)
P 		253
B 289.5
(3)
P 		115.9
(-2)
P 		120.2
(-1.9)
P 		81.4
(-3)
P 		208
C 270.6
(3)
P 		133.7
(-1.1)
P 		179.5
(0.3)
P 		69.1
(-3)
P 		202
avr 288.1
(3) 		107.5
(-1.9) 		142
(-1) 		67.2
(-3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 39.5
(-3)
P 		123.7
(0.1)
P 		105.9
(-0.5)
P 		201.7
(3)
P 		165.2
(1.6)
P 		115.6
(-0.2)
P 		162
B 85.9
(-3)
P 		119.5
(-1.9)
P 		102.1
(-2.5)
P 		184.5
(0.3)
P 		263.2
(3)
P 		209.5
(1.2)
P 		177
C 86
(-3)
P 		117.6
(-1.3)
P 		131.7
(-0.5)
P 		158.3
(0.9)
P 		197.5
(3)
P 		176
(1.8)
P 		112
avr 70.5
(-3) 		120.3
(-0.8) 		113.2
(-1.1) 		181.5
(1.8) 		208.6
(3) 		167
(1.2) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4463
Sequence Type Exemplar sequence
Representative Public ID C04A2.1 NCBI
Target Description C04A2.1 /REP_DB=WormBase Gene ID /WP=CE01768 /TR=SW:Q09445 /GB=AAC46732.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026738 NCBI Caenorhabditis elegans C04A2.1 (C04A2.1) mRNA, complete cds. 11/11 None
SNAP00000035665 ENSEMBL cdna:SNAP chromosome:CEL140:II:6849598:6851236:1 11/11 None
GENEFINDER00000035670 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6848102:6851236:1 11/11 None
C04A2.1 ENSEMBL cdna:known chromosome:CEL140:II:6848263:6851373:1 gene:C04A2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6848286-6851232(+) 94.53 100.0
Public Domain and Genome References
Gene Title
Ensembl C04A2.1
Entrez Gene 182185 Entrez gene
SwissProt Q09445 EMBL-EBI
WormBase CE36523 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591632_S_AT similar to GH regulated TBC protein 1 cfa
CANINE_2:CFA.2023.1.A1_AT similar to GH regulated TBC protein 1 cfa
CANINE_2:CFA.6315.1.S1_AT similar to GH regulated TBC protein 1 cfa
CANINE_2:CFAAFFX.10481.1.S1_AT similar to GH regulated TBC protein 1 cfa
CANINE_2:CFAAFFX.10495.1.S1_S_AT similar to GH regulated TBC protein 1 cfa
DROSOPHILA_2:1639728_AT dm
DROSGENOME1:155106_AT dm
CHICKEN:GGA.2183.1.S1_AT similar to GH regulated TBC protein 1 gga
MOUSE430A_2:1425891_A_AT GH regulated TBC protein 1 mm
MOE430A:1425891_A_AT GH regulated TBC protein 1 mm
MOUSE430_2:1425891_A_AT GH regulated TBC protein 1 mm
MG-U74CV2:165452_AT GH regulated TBC protein 1 mm
MOE430A:1439150_X_AT GH regulated TBC protein 1, mRNA (cDNA clone MGC:27905 IMAGE:3500563) mm
MOUSE430A_2:1439150_X_AT GH regulated TBC protein 1, mRNA (cDNA clone MGC:27905 IMAGE:3500563) mm
MOUSE430_2:1439150_X_AT GH regulated TBC protein 1, mRNA (cDNA clone MGC:27905 IMAGE:3500563) mm
RG-U34C:RC_AI070859_AT GH regulated TBC protein 1 (predicted) rn
RAE230B:1390918_AT GH regulated TBC protein 1 (predicted) rn
RAT230_2:1390918_AT GH regulated TBC protein 1 (predicted) rn
RAE230B:1379043_AT GH regulated TBC protein 1 (predicted) rn
RAT230_2:1379043_AT GH regulated TBC protein 1 (predicted) rn
RG-U34B:RC_AI069941_AT GH regulated TBC protein 1 (predicted) rn
YEAST_2:1773306_AT GTPase-activating protein for Sec4p and several other Rab GTPases, regulates exocytosis via its action on Sec4p, also required for proper actin organization; similar to Msb4p; both Msb3p and Msb4p localize to sites of polarized growth Sc
Protein Similarities
Method ID Description E-Value
blast AAS80348 Hypothetical protein C04A2.1 [Caenorhabditis elegans] ref|NP_001021909.1| C04A2.1 [Caenorhabditis elegans] sp|Q09445|YQ01_CAEEL Hypothetical protein C04A2.1 in chromosome II 0.0
blast AAS80348 Hypothetical protein C04A2.1 [Caenorhabditis elegans] ref|NP_001021909.1| C04A2.1 [Caenorhabditis elegans] sp|Q09445|YQ01_CAEEL Hypothetical protein C04A2.1 in chromosome II 1.0E-178
blast AAS80348 Hypothetical protein C04A2.1 [Caenorhabditis elegans] ref|NP_001021909.1| C04A2.1 [Caenorhabditis elegans] sp|Q09445|YQ01_CAEEL Hypothetical protein C04A2.1 in chromosome II 1.0E-148
blast T15401 hypothetical protein C04A2.1 - Caenorhabditis elegans 1.0E-101
blast CAE65977 Hypothetical protein CBG11166 [Caenorhabditis briggsae] 2.0E-85
blast T15401 hypothetical protein C04A2.1 - Caenorhabditis elegans 6.0E-83
blast CAE65977 Hypothetical protein CBG11166 [Caenorhabditis briggsae] 1.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 1.0E-20
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 1.0E-20
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:187191_AT
gcgtggtattcatcatatcttccgattgtcgtacgaagacggtgtcgatgggaaaaagag
aatccgagaagaaatagccatttgttgcaacgatttgttcgaaagggaattccacataca
tttcgtaaagaactttggctcagaagttgcccatcacgtgctgacggagtttggcagagg
catgaggttccagatgaagtgatcaagcaaattaaacttgatcttccaagaacatttcca
gataacaagtttctgaaaacagaaggaactcgtaaaacattgggaagagcattgttcgcg
gttgctgagcacattccaagtgttggttactgtcaaggattaaactttgtggctggaaca
gttcttcgtttatgggattgcttgatttacgaaggagatgaatggctattcagaattgca
gtggctctattccgttcaaatatgattgcaatttcatcgtgtgaatctattgatcaacta
atgacagaagttcaaaatattggaacaagtaaagcagctctctattgccatcaacttata
cttaaaagtgctgctctttcgattacaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTGGTATTCATCATATCTTCCGA 61 293 178 Antisense
AGGGAATTCCACATACATTTCGTAA 558 1 281 Antisense
TTGGCTCAGAAGTTGCCCATCACGT 397 709 312 Antisense
GCCCATCACGTGCTGACGGAGTTTG 456 285 326 Antisense
GGCAGAGGCATGAGGTTCCAGATGA 347 535 350 Antisense
GGAAGAGCATTGTTCGCGGTTGCTG 462 531 460 Antisense
GCGGTTGCTGAGCACATTCCAAGTG 292 293 475 Antisense
ACAGTTCTTCGTTTATGGGATTGCT 288 103 535 Antisense
AGAATTGCAGTGGCTCTATTCCGTT 416 75 589 Antisense
AGCTCTCTATTGCCATCAACTTATA 143 81 693 Antisense
AGTGCTGCTCTTTCGATTACAAATA 604 59 724 Antisense
Sequence Source Affymetrix Proprietary Database