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[187190_at]

Description F59B10.2 /REP_DB=WormBase Gene ID /WP=CE01591 /TR=SW:Q09950 /GB=CAA88601.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 64.7
(-3)
P 		88.6
(-1.1)
A 		87.1
(-1.2)
A 		139.1
(3)
P 		74
B 109
(2.6)
P 		70.3
(-3)
A 		76.8
(-2.1)
A 		112.1
(3)
A 		42
C 110.2
(1)
A 		101
(-0.3)
A 		81.8
(-3)
A 		124.1
(3)
P 		42
avr 94.6
(-1.2) 		86.6
(-2.3) 		81.9
(-3) 		125.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 129.2
(3)
M 		61
(-2)
A 		68.4
(-1.5)
P 		65.4
(-1.7)
A 		48.1
(-3)
A 		62.2
(-2)
A 		81
B 74.5
(1.8)
P 		84.6
(2.9)
A 		86
(3)
A 		26.4
(-3)
A 		71.1
(1.5)
A 		51.9
(-0.4)
P 		60
C 62.1
(-1.3)
A 		63.8
(-0.8)
M 		77.1
(3)
A 		56.1
(-3)
A 		65.4
(-0.3)
A 		64.3
(-0.7)
A 		21
avr 88.6
(3) 		69.8
(0.1) 		77.2
(1.3) 		49.3
(-3) 		61.5
(-1.1) 		59.5
(-1.4) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 23.5
(3)
P 		19.2
(-3)
A 		22.8
(2)
A 		20.4
(-1.3)
P 		4
B 34.7
(3)
P 		17.4
(-3)
A 		17.8
(-2.9)
A 		23.9
(-0.7)
A 		17
C 36.5
(3)
A 		29
(0.1)
A 		28.5
(-0.1)
A 		20.9
(-3)
P 		16
avr 31.6
(3) 		21.9
(-2.9) 		23
(-2.2) 		21.7
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 23.8
(3)
M 		21.7
(1.6)
A 		14.9
(-2.7)
P 		16.6
(-1.6)
A 		14.5
(-3)
A 		15.1
(-2.6)
A 		9
B 25.9
(2.2)
P 		28.2
(2.8)
A 		20.9
(0.8)
A 		7
(-3)
A 		28.9
(3)
A 		19.3
(0.4)
P 		22
C 23
(3)
A 		19.5
(1.2)
M 		19.6
(1.3)
A 		11.3
(-3)
A 		21.2
(2.1)
A 		21.5
(2.2)
A 		12
avr 24.2
(3) 		23.1
(2.5) 		18.5
(0.3) 		11.6
(-3) 		21.5
(1.7) 		18.6
(0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2911
Sequence Type Exemplar sequence
Representative Public ID F59B10.2 NCBI
Target Description F59B10.2 /REP_DB=WormBase Gene ID /WP=CE01591 /TR=SW:Q09950 /GB=CAA88601.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063862 NCBI Caenorhabditis elegans F59B10.2 (F59B10.2) mRNA, complete cds. 11/11 None
SNAP00000006041 ENSEMBL cdna:SNAP chromosome:CEL140:II:10507179:10509748:-1 11/11 None
GENEFINDER00000006047 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10507179:10509748:-1 11/11 None
F59B10.2 ENSEMBL cdna:known chromosome:CEL140:II:10507179:10509822:-1 gene:F59B10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10507175-10509819(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B10.2
Entrez Gene 186598 Entrez gene
SwissProt Q09950 EMBL-EBI
WormBase CE01591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88601 Hypothetical protein F59B10.2 [Caenorhabditis elegans] ref|NP_496263.1| F59B10.2 [Caenorhabditis elegans] sp|Q09950|YSR2_CAEEL Hypothetical protein F59B10.2 in chromosome II 1.0E-147
blast CAA88601 Hypothetical protein F59B10.2 [Caenorhabditis elegans] ref|NP_496263.1| F59B10.2 [Caenorhabditis elegans] sp|Q09950|YSR2_CAEEL Hypothetical protein F59B10.2 in chromosome II 1.0E-120
blast CAE59666 Hypothetical protein CBG03086 [Caenorhabditis briggsae] 9.0E-48
blast CAE59666 Hypothetical protein CBG03086 [Caenorhabditis briggsae] 3.0E-41
blast CAE59666 Hypothetical protein CBG03086 [Caenorhabditis briggsae] 4.0E-37
Sequence
Target Sequence 
>C. ELEGANS:187190_AT
tcttcctcggcttcaacaatatccaaagttactccaaagaaattagataaaccgcaaaaa
acaaagaaacctgataaaaaacgggccaagccagatgatattagacaaaacaaaaagcca
gagcccattccgtatgaagacttcattccgaagctcagctcaagatcgtctaattctgaa
aaatcaactgttcgagagacaaatcgaactctagaggaatcactgaaaaaaacattgaaa
atcaacaagtcatcagaaaaaatggagaagccgagaaaagatatcagaagagctccacga
tcttcgtcatcctcttcttcaacattaagggacgccgagagagaacaagatatcgagaga
cgcagagaaaagagagcccgaagattcagaagtaggaggagaagatctgaagaacctcat
acttgccaagagaacattcataatatgatagaatctgtaattgatacgcatgtccaaatg
ttggatgatttcaatcgaatggaatatgcagcagtttgtgaatggactcaagtactccga
aaatttgatggacatgatggacctagttctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCTCGGCTTCAACAATATCCA 684 617 844 Antisense
ACGGGCCAAGCCAGATGATATTAGA 140 93 924 Antisense
CAAAAAGCCAGAGCCCATTCCGTAT 544 191 954 Antisense
GAGCCCATTCCGTATGAAGACTTCA 153 385 964 Antisense
GAAGACTTCATTCCGAAGCTCAGCT 498 339 979 Antisense
GAAGCTCAGCTCAAGATCGTCTAAT 360 341 993 Antisense
AGAAGAGCTCCACGATCTTCGTCAT 353 73 1129 Antisense
CTCTTCTTCAACATTAAGGGACGCC 522 227 1155 Antisense
AAGGGACGCCGAGAGAGAACAAGAT 176 157 1170 Antisense
GATCTGAAGAACCTCATACTTGCCA 38 419 1247 Antisense
GGACATGATGGACCTAGTTCTCAGA 261 525 1393 Antisense
Sequence Source Affymetrix Proprietary Database