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[187189_at]

Description EEED8.1 /REP_DB=WormBase Gene ID /WP=CE26746 /TR=SW:Q09293 /GB=AAK68296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 01      4grp_high_8_8 > 54      6grp_highest_nonorm > 98      6grp_total > 89      4grp_total > 50      6grp_highest_sub > Cu      6grp_cgc > 69      6grp_high1_sub > Cu      6grp_cgc_sub > Da      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 505
1 2 3 4 range
A 586.5
(-3)
P 		818.7
(0.3)
P 		1010.8
(3)
P 		584.9
(-3)
P 		426
B 623.6
(-2.5)
P 		1002.6
(3)
P 		883.6
(1.3)
P 		585.6
(-3)
P 		417
C 655.8
(-1.2)
P 		1010.5
(3)
P 		844.1
(1)
P 		505.4
(-3)
P 		505
avr 622
(-2) 		943.9
(3) 		912.8
(2.5) 		558.6
(-3) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1319
1 2 3 4 5 6 range
A 536.5
(-2.3)
P 		551
(-2.2)
P 		384.8
(-3)
P 		602
(-2)
P 		1350
(1.5)
P 		1674.5
(3)
P 		1290
B 740.2
(-1.3)
P 		454
(-2.6)
P 		369.5
(-3)
P 		535.2
(-2.2)
P 		1302.1
(1.2)
P 		1688.9
(3)
P 		1319
C 724.2
(-1.6)
P 		436.7
(-3)
P 		477.2
(-2.8)
P 		619.6
(-2.1)
P 		1209
(0.8)
P 		1647
(3)
P 		1210
avr 667
(-1.8) 		480.6
(-2.7) 		410.5
(-3) 		585.6
(-2.2) 		1287
(1.2) 		1670.1
(3) 		1260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 213.5
(1.3)
P 		177.7
(0.1)
P 		264.2
(3)
P 		85.6
(-3)
P 		179
B 198.9
(0.6)
P 		247.6
(3)
P 		204.8
(0.9)
P 		124.8
(-3)
P 		123
C 217.1
(0.8)
P 		290.5
(2.9)
P 		294.2
(3)
P 		85.2
(-3)
P 		209
avr 209.8
(1.3) 		238.6
(2.4) 		254.4
(3) 		98.5
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 98.9
(-2.7)
P 		196
(-0.9)
P 		83.8
(-3)
P 		152.7
(-1.7)
P 		407.4
(3)
P 		407.7
(3)
P 		324
B 257.6
(-1.1)
P 		151.1
(-2.3)
P 		89.7
(-3)
P 		141.8
(-2.4)
P 		529
(1.9)
P 		629.8
(3)
P 		540
C 268.4
(-0.9)
P 		133.3
(-2.8)
P 		121.5
(-3)
P 		124.6
(-3)
P 		391.2
(0.8)
P 		551.3
(3)
P 		430
avr 208.3
(-1.5) 		160.1
(-2.1) 		98.3
(-3) 		139.7
(-2.4) 		442.5
(1.8) 		529.6
(3) 		431
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5036
Sequence Type Exemplar sequence
Representative Public ID EEED8.1 NCBI
Target Description EEED8.1 /REP_DB=WormBase Gene ID /WP=CE26746 /TR=SW:Q09293 /GB=AAK68296.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062627 NCBI Caenorhabditis elegans EEED8.1 (udr-1) mRNA, complete cds. 11/11 None
SNAP00000006554 ENSEMBL cdna:SNAP chromosome:CEL140:II:5421249:5422634:1 11/11 None
GENEFINDER00000006569 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5421249:5422634:1 11/11 None
EEED8.1 ENSEMBL cdna:known chromosome:CEL140:II:5421247:5422711:1 gene:EEED8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5419319-5422632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tudr-1
Ensembl EEED8.1
Entrez Gene 173925 Entrez gene
SwissProt Q09293 EMBL-EBI
WormBase CE26746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68296 Hypothetical protein EEED8.1 [Caenorhabditis elegans] ref|NP_495028.1| EEED8.1 [Caenorhabditis elegans] gb|AAG50209.1| 2F713 [Caenorhabditis elegans] sp|Q09293|YQO1_CAEEL Hypothetical RNA-binding protein EEED8.1 in chromosome II 0.0
blast T15929 hypothetical protein EEED8.1 - Caenorhabditis elegans 0.0
blast CAE59100 Hypothetical protein CBG02394 [Caenorhabditis briggsae] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR008191 EMBL-EBI Maternal tudor protein 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:187189_AT
gctcaaattgttccattcgattcggagctcgaaattggctacgatggagtcttccgtgat
gctccccgttccgttcgacgcgttcgacgcatctcagccaccaagctttatctcgttgat
tttggaaaaattatcaattatgagaaggcaaaatgcttccaattgccaaaagttttccag
tcgatgccgacaagggtttccttgtgtggactagatggtcttacctggtcaccagtcgcc
attccatcatttgataatattcgcgaggttgttaaaaaatggggacaaatggaaaattcg
acgcttcacgccatggcttgtggatttcaaggctctattaacatgatcaatctgttctgt
ggaaaatcgattcttgctgaccgtcttcaacgtaaaggtgtctgtgaatacttgccacgc
agtcagcagccacactatgcatactcccgcgagactcttcttcagcacaataatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAAATTGTTCCATTCGATTCGG 514 301 1303 Antisense
AGCCACCAAGCTTTATCTCGTTGAT 459 83 1398 Antisense
CAAAAGTTTTCCAGTCGATGCCGAC 101 189 1469 Antisense
GACTAGATGGTCTTACCTGGTCACC 176 373 1511 Antisense
AGTCGCCATTCCATCATTTGATAAT 375 61 1536 Antisense
TGGAAAATTCGACGCTTCACGCCAT 585 547 1592 Antisense
TTCACGCCATGGCTTGTGGATTTCA 15 687 1607 Antisense
GAAAATCGATTCTTGCTGACCGTCT 217 353 1664 Antisense
GTGAATACTTGCCACGCAGTCAGCA 356 481 1706 Antisense
GTCAGCAGCCACACTATGCATACTC 301 465 1724 Antisense
GAGACTCTTCTTCAGCACAATAATT 495 393 1753 Antisense
Sequence Source Affymetrix Proprietary Database