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[187188_s_at]

Description F26H11.5 /REP_DB=WormBase Gene ID /WP=CE24922 /TR=SW:O45405 /GB=CAB04193.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 883
1 2 3 4 range
A 387.9
(-3)
P 		525
(-2)
P 		713.2
(-0.7)
P 		1238.4
(3)
P 		851
B 361.8
(-3)
P 		562.6
(-1.6)
P 		623.8
(-1.2)
P 		1244.7
(3)
P 		883
C 397.9
(-3)
P 		425.4
(-2.8)
P 		644.5
(-1)
P 		1150
(3)
P 		752
avr 382.5
(-3) 		504.3
(-2.1) 		660.5
(-1) 		1211
(3) 		829

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 494
(-2.5)
P 		430.6
(-3)
P 		672
(-1)
P 		676.9
(-0.9)
P 		853.2
(0.5)
P 		1150.2
(3)
P 		720
B 577.4
(-3)
P 		578.2
(-3)
P 		722.8
(-1.6)
P 		769
(-1.2)
P 		867
(-0.2)
P 		1204.4
(3)
P 		627
C 371.6
(-3)
P 		592.8
(-1.4)
P 		507.8
(-2)
P 		878.3
(0.7)
P 		746.1
(-0.2)
P 		1186.1
(3)
P 		815
avr 481
(-3) 		533.9
(-2.5) 		634.2
(-1.7) 		774.7
(-0.5) 		822.1
(-0.1) 		1180.2
(3) 		699
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 141.2
(-0.7)
P 		114
(-3)
P 		186.4
(3)
P 		181.3
(2.6)
P 		72
B 115.4
(-3)
P 		139
(-2.1)
P 		144.6
(-1.8)
P 		265.2
(3)
P 		150
C 131.7
(-2.4)
P 		122.3
(-3)
P 		224.6
(3)
P 		193.9
(1.2)
P 		102
avr 129.4
(-2.7) 		125.1
(-3) 		185.2
(1.1) 		213.5
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 91.1
(-3)
P 		153.1
(-1)
P 		146.3
(-1.2)
P 		171.7
(-0.4)
P 		257.5
(2.3)
P 		280
(3)
P 		189
B 200.9
(-2.4)
P 		192.5
(-2.6)
P 		175.5
(-3)
P 		203.7
(-2.4)
P 		352.2
(0.9)
P 		449.1
(3)
P 		274
C 137.7
(-2.8)
P 		180.9
(-1.8)
P 		129.2
(-3)
P 		176.6
(-1.9)
P 		241.4
(-0.5)
P 		397.1
(3)
P 		268
avr 143.2
(-3) 		175.5
(-2.2) 		150.3
(-2.8) 		184
(-1.9) 		283.7
(0.6) 		375.4
(3) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187188_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3037
Sequence Type Exemplar sequence
Representative Public ID F26H11.5 NCBI
Target Description F26H11.5 /REP_DB=WormBase Gene ID /WP=CE24922 /TR=SW:O45405 /GB=CAB04193.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064599 NCBI Caenorhabditis elegans EXC-4 (ion channel) Like family member (exl-1) (exl-1) mRNA, complete cds. 11/11 None
SNAP00000043656 ENSEMBL cdna:SNAP chromosome:CEL140:II:14412130:14413355:-1 11/11 None
GENEFINDER00000043663 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14412130:14413315:-1 11/11 None
F26H11.5 ENSEMBL cdna:known chromosome:CEL140:II:14412130:14413355:-1 gene:F26H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14412126-14413352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol exl-1
Ensembl F26H11.5
Entrez Gene 175100 Entrez gene
SwissProt O45405 EMBL-EBI
WormBase CE24922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04193 Hypothetical protein F26H11.5 [Caenorhabditis elegans] ref|NP_497000.1| EXC-4 (ion channel) Like family member (exl-1) [Caenorhabditis elegans] sp|O45405|EXL1_CAEEL Chloride intracellular channel exl-1 (Exc-4-like protein) 1.0E-137
blast T21429 hypothetical protein F26H11.5 - Caenorhabditis elegans 1.0E-126
blast T21429 hypothetical protein F26H11.5 - Caenorhabditis elegans 1.0E-122
blast CAB04193 Hypothetical protein F26H11.5 [Caenorhabditis elegans] ref|NP_497000.1| EXC-4 (ion channel) Like family member (exl-1) [Caenorhabditis elegans] sp|O45405|EXL1_CAEEL Chloride intracellular channel exl-1 (Exc-4-like protein) 1.0E-121
blast CAE65935 Hypothetical protein CBG11108 [Caenorhabditis briggsae] 1.0E-111
Sequence
Target Sequence 
>C. ELEGANS:187188_S_AT
gtaccacgcaaaacacgatccaacgatgaaattcgatgtgaaaaccacaaatgtgaacaa
gacaagtcaagagttcaaaaacactggactccgtcgtatgcctggaattagtgctgaaga
gagcggagagacgcagacattcgagacggaggacgatattttggactttttggagtactt
gaagcccgagagaggtgatgatgaagaagcggagaatgccacgtgtgatttgttccgaca
attcgccagattcgtgaaggatgtcgagcatagggatacggctttcaacacggaactcct
tcgtctcgacaagtatctctccgaacaagaaaccaaatttctgatctccgatgacgtcac
gcatattgattgcctggtcctgacgagattgcactcgatccgtgttgccgcaaaaatgct
gaaaaactatgaaattccagccgatttatcgcatgtactcgactatctgaaagccggtta
cgcgactgaaatgtttcgagtttcgtgtccatccgatcaggaaattgttcttcactggac
agagctcaaggatacgcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCACGCAAAACACGATCCAACG 122 457 105 Antisense
AAAAACACTGGACTCCGTCGTATGC 656 121 181 Antisense
GCCACGTGTGATTTGTTCCGACAAT 570 279 322 Antisense
GTTCCGACAATTCGCCAGATTCGTG 358 441 336 Antisense
GAACTCCTTCGTCTCGACAAGTATC 670 347 397 Antisense
GATCTCCGATGACGTCACGCATATT 466 419 447 Antisense
GATTGCCTGGTCCTGACGAGATTGC 697 433 472 Antisense
GTACTCGACTATCTGAAAGCCGGTT 494 457 559 Antisense
AAAGCCGGTTACGCGACTGAAATGT 183 119 574 Antisense
GTTTCGTGTCCATCCGATCAGGAAA 510 449 604 Antisense
TGGACAGAGCTCAAGGATACGCCCC 437 547 640 Antisense
Sequence Source Affymetrix Proprietary Database